VPS16 Gene Summary [Human]

Vesicle mediated protein sorting plays an important role in segregation of intracellular molecules into distinct organelles. Genetic studies in yeast have identified more than 40 vacuolar protein sorting (VPS) genes involved in vesicle transport to vacuoles. This gene encodes the human homolog of yeast class C Vps16 protein. The mammalian class C Vps proteins are predominantly associated with late endosomes/lysosomes, and like their yeast counterparts, may mediate vesicle trafficking steps in the endosome/lysosome pathway. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2009]

Details

Type
Protein Coding
Official Symbol
VPS16
Official Name
VPS16 core subunit of CORVET and HOPS complexes [Source:HGNC Symbol;Acc:HGNC:14584]
Ensembl ID
ENSG00000215305
Bio databases IDs NCBI: 64601 Ensembl: ENSG00000215305
Aliases VPS16 core subunit of CORVET and HOPS complexes
Synonyms 1810074M16Rik, DYT30, hVPS16, mVPS16, VPS16 core subunit of CORVET and HOPS complexes, VSP16 CORVET/HOPS core subunit
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human VPS16 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • actin filament binding
  • Vps16, N-terminal region
  • Vps16, C-terminal region
  • actin binding
  • protein binding
  • transporter

Pathways

Biological processes and signaling networks where the VPS16 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • epithelial cancer
  • liver cancer
  • lung adenocarcinoma
  • lung adenocarcinoma formation
  • hepatocellular carcinoma
  • prostate cancer
  • dystonia type 30
  • papillary renal cell carcinoma
  • papillary renal cell neoplasia
  • renal cell cancer
regulated by
regulates
role in cell
  • replication in
  • entrance
  • autophagy
  • autophagy in
  • recycling in
  • dipeptide repeat protein sensitivity
  • fusion

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • membrane fraction
  • presynaptic regions
  • cell periphery
  • cellular membrane
  • endosomes
  • vesicles
  • lysosome
  • actin filaments
  • cytosol
  • endosomal membrane
  • recycling endosomes
  • early endosomes
  • late endosomes
  • perikaryon
  • axons
  • clathrin-coated vesicles
  • cytosolic fraction

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human VPS16 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • regulation of SNARE complex assembly
  • endosomal transport
  • vacuole fusion, non-autophagic
  • endosome to lysosome transport
  • endosomal vesicle fusion
  • intracellular protein transport

Cellular Component

Where in the cell the gene product is active
  • CORVET complex
  • late endosome
  • autophagic vacuole
  • lysosomal membrane
  • lysosome
  • late endosome membrane
  • early endosome
  • endosome
  • recycling endosome
  • endosome membrane
  • clathrin-coated vesicle
  • HOPS complex

Molecular Function

What the gene product does at the molecular level
  • protein binding
  • actin binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.