PCDHGB1 Gene Summary [Human]

This gene is a member of the protocadherin gamma gene cluster, one of three related clusters tandemly linked on chromosome five. These gene clusters have an immunoglobulin-like organization, suggesting that a novel mechanism may be involved in their regulation and expression. The gamma gene cluster includes 22 genes divided into 3 subfamilies. Subfamily A contains 12 genes, subfamily B contains 7 genes and 2 pseudogenes, and the more distantly related subfamily C contains 3 genes. The tandem array of 22 large, variable region exons are followed by a constant region, containing 3 exons shared by all genes in the cluster. Each variable region exon encodes the extracellular region, which includes 6 cadherin ectodomains and a transmembrane region. The constant region exons encode the common cytoplasmic region. These neural cadherin-like cell adhesion proteins most likely play a critical role in the establishment and function of specific cell-cell connections in the brain. Alternative splicing has been described for the gamma cluster genes. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
PCDHGB1
Official Name
protocadherin gamma subfamily B, 1 [Source:HGNC Symbol;Acc:HGNC:8708]
Ensembl ID
ENSG00000254221
Bio databases IDs NCBI: 56104 Ensembl: ENSG00000254221
Aliases protocadherin gamma subfamily B, 1, protocadherin gamma subfamily B, 1, isoform 2
Synonyms PCDH-GAMMA-B1, PCDH-γ-B1, protocadherin gamma subfamily B, 1, protocadherin γ subfamily B, 1, RGD1560482
Species
Human, Homo sapiens
OrthologiesMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human PCDHGB1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • extracellular domain
  • cytoplasmic domain
  • Cadherin-like
  • Cadherin repeat-like domain
  • protein binding
  • Cadherin cytoplasmic C-terminal

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
regulated by
regulates
role in cell
  • survival
  • quantity
  • apoptosis

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • cellular membrane
  • growth cone

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human PCDHGB1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • nervous system development
  • cell adhesion
  • homophilic cell adhesion

Cellular Component

Where in the cell the gene product is active
  • growth cone
  • plasma membrane

Molecular Function

What the gene product does at the molecular level
  • calcium ion binding

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