LOC108348074 Gene Summary [Rat]

This gene encodes the alpha chain of type XV collagen, a member of the FACIT collagen family (fibril-associated collagens with interrupted helices). Type XV collagen has a wide tissue distribution but the strongest expression is localized to basement membrane zones so it may function to adhere basement membranes to underlying connective tissue stroma. The proteolytically produced C-terminal fragment of type XV collagen is restin, a potentially antiangiogenic protein that is closely related to endostatin. Mouse studies have shown that collagen XV deficiency is associated with muscle and microvessel deterioration. [provided by RefSeq, May 2013]

Details

Type
Protein Coding
Official Symbol
LOC108348074
Official Name
collagen alpha-1(XV) chain-like [Source:RGD Symbol;Acc:11464459]
Ensembl ID
ENSRNOG00000039197
Bio databases IDs NCBI: 298069 Ensembl: ENSRNOG00000039197
Aliases collagen alpha-1(XV) chain-like
Synonyms Col15, COL15A, collagen, type XV, alpha 1, collagen type XV alpha 1 chain, collagen, type XV, α 1, collagen type XV α 1 chain, Collagen xv, LOC108348074
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Loc108348074 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • extracellular matrix structural constituent conferring tensile strength
  • Concanavalin A-like lectin/glucanases superfamily
  • Collagen trimerization domain
  • LamG
  • Endostatin-like
  • Collagenase NC10 and Endostatin
  • Collagen triple helix repeat (20 copies)
  • protein binding
  • endostatin domain

Pathways

Biological processes and signaling networks where the Loc108348074 gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • acute myeloid leukemia
  • angioimmunoblastic T-cell lymphoma
  • squamous cell cancer of the oral cavity
  • hepatocellular carcinoma
  • oral squamous cell carcinoma
  • ovarian carcinoma
  • epithelial cancer
  • serous ovarian adenocarcinoma
  • epithelial ovarian cancer
  • colorectal cancer
regulated by
role in cell
  • morphology
  • degeneration
  • abnormal morphology

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Extracellular Space
  • Endoplasmic Reticulum
  • endoplasmic reticulum lumen
  • extracellular matrix
  • basement membrane

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Loc108348074 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • signal transduction
  • angiogenesis
  • extracellular matrix organization
  • cell differentiation
  • cell adhesion

Cellular Component

Where in the cell the gene product is active
  • endoplasmic reticulum lumen
  • extracellular space
  • basement membrane
  • extracellular vesicular exosome
  • membrane
  • collagen type XV
  • extracellular region

Molecular Function

What the gene product does at the molecular level
  • extracellular matrix structural constituent conferring tensile strength

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.