APOB Gene Summary [Human]

This gene product is the main apolipoprotein of chylomicrons and low density lipoproteins (LDL), and is the ligand for the LDL receptor. It occurs in plasma as two main isoforms, apoB-48 and apoB-100: the former is synthesized exclusively in the gut and the latter in the liver. The intestinal and the hepatic forms of apoB are encoded by a single gene from a single, very long mRNA. The two isoforms share a common N-terminal sequence. The shorter apoB-48 protein is produced after RNA editing of the apoB-100 transcript at residue 2180 (CAA->UAA), resulting in the creation of a stop codon, and early translation termination. Mutations in this gene or its regulatory region cause hypobetalipoproteinemia, normotriglyceridemic hypobetalipoproteinemia, and hypercholesterolemia due to ligand-defective apoB, diseases affecting plasma cholesterol and apoB levels. [provided by RefSeq, Dec 2019]

Details

Type
Protein Coding
Official Symbol
APOB
Official Name
apolipoprotein B [Source:HGNC Symbol;Acc:HGNC:603]
Ensembl ID
ENSG00000084674
Bio databases IDs NCBI: 338 Ensembl: ENSG00000084674
Aliases apolipoprotein B
Synonyms Aa1064, Ac1-060, AI315052, APOB-29, APOLIPOPROTEIN B, FCHL2, FLDB, LDLCQ4
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human APOB often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • phospholipid binding
  • Domain of Unknown Function (DUF1081)
  • palmitoylation site
  • LXG domain of WXG superfamily
  • alpha helix
  • enzyme binding
  • low-density lipoprotein receptor binding
  • protein binding
  • Apolipoprotein B100 C terminal
  • Vitellinogen, open beta-sheet
  • lipid transporter
  • beta strand or sheet
  • proteoglycan binding domain
  • receptor binding domain
  • Lipoprotein N-terminal Domain
  • N-linked glycosylation site
  • Lipoprotein amino terminal region
  • receptor agonist activity
  • heparin binding
  • transporter

Pathways

Biological processes and signaling networks where the APOB gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • schizophrenia
  • stroke
  • diabetes mellitus
  • Alzheimer disease
  • familial hyperlipoproteinemia type IIa
  • familial hypobetalipoproteinemia type 1
  • hypobetalipoproteinemia
  • familial defective apo b-100
  • hypercholesterolemia
  • familial hypercholesterolemia
regulated by
  • genistein
  • lipopolysaccharide
  • fenofibrate
  • silymarin
  • simvastatin
  • pioglitazone
  • pimagedine
  • IL1B
  • insulin
  • IL6
regulates
role in cell
  • cell viability
  • cell death
  • formation
  • expression in
  • survival
  • differentiation
  • proliferation
  • activation
  • quantity
  • recruitment

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Extracellular Space
  • microsomal fraction
  • endoplasmic reticulum fraction
  • golgi/trans-golgi network-rich vesicle fraction
  • Golgi-enriched fraction
  • detergent resistant lipid raft fraction
  • endocytic vesicle membrane
  • intracellular membrane-bounded organelle
  • VLDL transport vesicle
  • Cytoplasm
  • intracellular space
  • perinuclear region
  • organelle lumens
  • cellular membrane
  • Plasma Membrane
  • endosomes
  • vesicles
  • Golgi Apparatus
  • Endoplasmic Reticulum
  • cytosol
  • endoplasmic reticulum membrane
  • endoplasmic reticulum lumen
  • microsome
  • pre-lysosomal compartments
  • lysosomal compartment
  • endosomal membrane
  • perinuclear space
  • nuclear scaffolds
  • recycling endosomes
  • early endosomes
  • smooth endoplasmatic reticulum
  • extracellular matrix
  • perikaryon
  • dendrites
  • sorting endosomes
  • Golgi vesicles
  • plasma

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human APOB gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • low-density lipoprotein particle remodeling
  • post-embryonic development
  • cholesterol metabolic process
  • nervous system development
  • response to virus
  • lipoprotein biosynthetic process
  • cholesterol homeostasis
  • lipoprotein catabolic process
  • triglyceride mobilization
  • lipoprotein transport
  • in utero embryonic development
  • establishment of localization in cell
  • cholesterol transport
  • low-density lipoprotein particle clearance
  • spermatogenesis
  • artery morphogenesis
  • fertilization
  • sperm motility
  • regulation of cholesterol biosynthetic process
  • positive regulation of gene expression
  • positive regulation of cholesterol storage
  • very-low-density lipoprotein particle assembly
  • cholesterol efflux
  • triglyceride catabolic process
  • positive regulation of macrophage derived foam cell differentiation
  • positive regulation of lipid storage

Cellular Component

Where in the cell the gene product is active
  • smooth endoplasmic reticulum
  • lysosomal lumen
  • neuronal cell body
  • extracellular region
  • endoplasmic reticulum membrane
  • endoplasmic reticulum lumen
  • early endosome
  • clathrin-coated endocytic vesicle membrane
  • extracellular vesicular exosome
  • intracellular membrane-bounded organelle
  • cytosol
  • very-low-density lipoprotein particle
  • chylomicron remnant
  • chylomicron
  • intermediate-density lipoprotein particle
  • low-density lipoprotein particle
  • plasma membrane
  • lipid particle
  • extracellular space
  • cytoplasm
  • endocytic vesicle lumen
  • endosome lumen
  • endoplasmic reticulum exit site
  • endosome membrane
  • mature chylomicron

Molecular Function

What the gene product does at the molecular level
  • lipase binding
  • low-density lipoprotein particle receptor binding
  • protein binding
  • heparin binding
  • phospholipid binding

Gene-Specific Assays for Results You Can Trust

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