DNMT3B Gene Summary [Human]

CpG methylation is an epigenetic modification that is important for embryonic development, imprinting, and X-chromosome inactivation. Studies in mice have demonstrated that DNA methylation is required for mammalian development. This gene encodes a DNA methyltransferase which is thought to function in de novo methylation, rather than maintenance methylation. The protein localizes primarily to the nucleus and its expression is developmentally regulated. Mutations in this gene cause the immunodeficiency-centromeric instability-facial anomalies (ICF) syndrome. Eight alternatively spliced transcript variants have been described. The full length sequences of variants 4 and 5 have not been determined. [provided by RefSeq, May 2011]

Details

Type
Protein Coding
Official Symbol
DNMT3B
Official Name
DNA methyltransferase 3 beta [Source:HGNC Symbol;Acc:HGNC:2979]
Ensembl ID
ENSG00000088305
Bio databases IDs NCBI: 1789 Ensembl: ENSG00000088305
Aliases DNA methyltransferase 3 beta
Synonyms DNA Methyltransferase 3B, DNA methyltransferase 3 beta, DNA methyltransferase 3 β, DNA MTase HsaIIIB, FSHD4, ICF, ICF1, M.HsaIIIB, MmuIIIB
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human DNMT3B often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • catalytic domain
  • transcription co-repressor
  • PWWP domain
  • histone deacetylase binding
  • PWWP (Pro-Trp-Trp-Pro) domain
  • chromatin binding
  • enzyme
  • protein binding
  • AdoMet_MTases
  • DNA (cytosine-5-)-methyltransferase
  • DNA binding
  • RNA binding
  • Cysteine rich ADD domain in DNMT3
  • FYVE domain like superfamily
  • methyltransferase
  • ATRX-homology domain
  • DNA-methyltransferase (dcm)

Pathways

Biological processes and signaling networks where the DNMT3B gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • cancer
  • metastasis
  • epithelial cancer
  • epithelial neoplasia
  • lung adenocarcinoma
  • non-Hodgkin disease
  • squamous cell lung cancer
  • hematologic cancer
  • hematological neoplasia
  • lung squamous cell carcinoma
regulated by
regulates
role in cell
  • expression in
  • apoptosis
  • growth
  • quantity
  • proliferation
  • cell death
  • cell cycle progression
  • migration
  • invasion by
  • formation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • chromatin fraction
  • nuclear matrix fraction
  • heterochromatin
  • Cytoplasm
  • Plasma Membrane
  • cytoplasmic aggregates
  • nuclear foci
  • chromosome
  • nucleoplasm
  • centromeres
  • chromatin

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human DNMT3B gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • negative regulation of transcription from RNA polymerase II promoter
  • positive regulation of gene expression
  • methylation

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • DNA binding
  • DNA (cytosine-5-)-methyltransferase activity
  • protein binding
  • transcription corepressor activity
  • metal ion binding
  • DNA (cytosine-5-)-methyltransferase activity, acting on CpG substrates
  • DNA-methyltransferase activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.