PABPN1 Gene Summary [Human]

This gene encodes an abundant nuclear protein that binds with high affinity to nascent poly(A) tails. The protein is required for progressive and efficient polymerization of poly(A) tails at the 3' ends of eukaryotic transcripts and controls the size of the poly(A) tail to about 250 nt. At steady-state, this protein is localized in the nucleus whereas a different poly(A) binding protein is localized in the cytoplasm. This gene contains a GCG trinucleotide repeat at the 5' end of the coding region, and expansion of this repeat from the normal 6 copies to 8-13 copies leads to autosomal dominant oculopharyngeal muscular dystrophy (OPMD) disease. Related pseudogenes have been identified on chromosomes 19 and X. Read-through transcription also exists between this gene and the neighboring upstream BCL2-like 2 (BCL2L2) gene. [provided by RefSeq, Dec 2010]

Details

Type
Protein Coding
Official Symbol
PABPN1
Official Name
poly(A) binding protein nuclear 1 [Source:HGNC Symbol;Acc:HGNC:8565]
Ensembl ID
ENSG00000100836
Bio databases IDs NCBI: 8106 Ensembl: ENSG00000100836
Aliases poly(A) binding protein nuclear 1
Synonyms mPABII, OPMD, PAB2, PABII, PABN1, PABP-2, Pabp3, poly(A) binding protein nuclear 1, poly(A) binding protein, nuclear 1
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human PABPN1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • RNA recognition motif (RRM) superfamily
  • RNA recognition motif
  • enzyme binding
  • poly(A) binding protein
  • enzyme
  • protein binding
  • identical protein binding
  • polyalanine repeat
  • RNA binding

Pathways

Biological processes and signaling networks where the PABPN1 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • liver cancer
  • oculopharyngeal muscular dystrophy type 1
  • oculopharyngeal muscular dystrophy
  • hereditary disorder
  • dysphagia
  • hepatoblastoma
regulated by
regulates
role in cell
  • expression in
  • apoptosis
  • proliferation
  • formation
  • fusion
  • migration
  • binding in
  • damage in
  • autophagy in
  • response

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • Cytoplasm
  • cytosol
  • spliceosomes
  • nuclear foci
  • nucleoplasm
  • nuclear speckles

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human PABPN1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • MAPK cascade
  • cellular response to lipopolysaccharide
  • muscle contraction
  • RNA processing
  • mRNA processing
  • poly(A)+ mRNA export from nucleus

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • nuclear inclusion body
  • cytoplasm
  • nuclear speck
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • RNA polymerase binding
  • RNA binding
  • protein binding
  • poly(A) RNA binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.