TBP Gene Summary [Human]

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes TBP, the TATA-binding protein. A distinctive feature of TBP is a long string of glutamines in the N-terminus. This region of the protein modulates the DNA binding activity of the C terminus, and modulation of DNA binding affects the rate of transcription complex formation and initiation of transcription. The number of CAG repeats encoding the polyglutamine tract is usually 25-42, and expansion of the number of repeats to 45-66 increases the length of the polyglutamine string and is associated with spinocerebellar ataxia 17, a neurodegenerative disorder classified as a polyglutamine disease. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2016]

Details

Type
Protein Coding
Official Symbol
TBP
Official Name
TATA-box binding protein [Source:HGNC Symbol;Acc:HGNC:11588]
Ensembl ID
ENSG00000112592
Bio databases IDs NCBI: 6908 Ensembl: ENSG00000112592
Aliases TATA-box binding protein, Spinocerebellar ataxia 17
Synonyms GTF2D, GTF2D1, HDL4, SCA17, TATA-box binding protein, TATA BOX FACTOR, TBP1, TFIID
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human TBP often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • core domain, structural
  • activation domain
  • transcription regulator
  • inhibitory DNA-binding domain
  • DNA binding domain
  • nucleic acid binding
  • enzyme binding
  • transcription factor binding
  • protein binding
  • general RNA polymerase II transcription factor
  • phosphotyrosine binding domain
  • sequence-specific DNA binding
  • core domain, functional
  • DNA binding
  • aryl hydrocarbon receptor binding
  • double-stranded DNA binding
  • n-terminal repeat
  • polyglutamine repeat
  • p53-binding domain
  • TBP_TLF

Pathways

Biological processes and signaling networks where the TBP gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • hepatocellular carcinoma
  • Huntington disease
  • epithelial cancer
  • spinocerebellar ataxia 17
  • ataxia
  • liver cancer
  • motor dysfunction
  • COVID-19
  • global developmental delay
  • neurodegeneration
regulated by
  • adenosine triphosphate
  • IFNG
  • ADCYAP1
  • beta-estradiol
  • SB203580
  • PD98059
  • BTAF1
  • lipopolysaccharide
  • TNF
  • HSP70
regulates
role in cell
  • expression in
  • phosphorylation in
  • growth
  • activation in
  • morphology
  • degeneration
  • transcription in
  • destabilization in
  • aggregation
  • shutdown

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • detergent-insoluble fractions
  • nucleolar fraction
  • aggregate
  • Cytoplasm
  • cytosol
  • chromosome
  • nucleoplasm
  • pronucleus
  • chromatin
  • perikaryon
  • detergent-soluble fraction

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human TBP gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • mRNA transcription from RNA polymerase II promoter
  • RNA polymerase I transcriptional preinitiation complex assembly
  • RNA polymerase II transcriptional preinitiation complex assembly
  • transcription from RNA polymerase III promoter
  • positive regulation of transcription initiation from RNA polymerase II promoter
  • spermatogenesis
  • transcription from RNA polymerase II promoter
  • transcription initiation, DNA-dependent
  • transcription initiation from RNA polymerase II promoter

Cellular Component

Where in the cell the gene product is active
  • transcription factor TFIIA complex
  • chromatin
  • nucleoplasm
  • male germ cell nucleus
  • female germ cell nucleus
  • RNA polymerase transcription factor SL1 complex
  • nucleus
  • euchromatin
  • male pronucleus
  • transcription factor TFIID complex
  • cytoplasm
  • macromolecular complex
  • female pronucleus

Molecular Function

What the gene product does at the molecular level
  • RNA polymerase II core promoter sequence-specific DNA binding
  • RNA polymerase II core promoter proximal region sequence-specific DNA binding
  • transcription regulatory region sequence-specific DNA binding
  • core RNA polymerase III binding transcription factor activity
  • core promoter sequence-specific DNA binding
  • RNA polymerase I CORE element sequence-specific DNA binding
  • protein binding
  • aryl hydrocarbon receptor binding
  • general RNA polymerase II transcription factor activity
  • TFIIB-class transcription factor binding
  • RNA polymerase II basal transcription factor binding
  • enzyme binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.