LDLR Gene Summary [Human]

The low density lipoprotein receptor (LDLR) gene family consists of cell surface proteins involved in receptor-mediated endocytosis of specific ligands. The encoded protein is normally bound at the cell membrane, where it binds low density lipoprotein/cholesterol and is taken into the cell. Lysosomes release the cholesterol, which is made available for repression of microsomal enzyme 3-hydroxy-3-methylglutaryl coenzyme A (HMG CoA) reductase, the rate-limiting step in cholesterol synthesis. At the same time, a reciprocal stimulation of cholesterol ester synthesis takes place. Mutations in this gene cause the autosomal dominant disorder, familial hypercholesterolemia. Alternate splicing results in multiple transcript variants.[provided by RefSeq, May 2022]

Details

Type
Protein Coding
Official Symbol
LDLR
Official Name
low density lipoprotein receptor [Source:HGNC Symbol;Acc:HGNC:6547]
Ensembl ID
ENSG00000130164
Bio databases IDs NCBI: 3949 Ensembl: ENSG00000130164
Aliases low density lipoprotein receptor, familial hypercholesterolemia
Synonyms FH, FHC, FHCL1, Hlb301, LDLCQ2, LDLRA, low density lipoprotein receptor
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human LDLR often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • protein interaction domain
  • O-linked glycosylation site
  • clathrin binding
  • low-density lipoprotein binding
  • identical protein binding
  • EGF_CA
  • NPXY motif
  • N-linked glycosylation site
  • cytoplasmic domain
  • ligand-binding domain
  • intracellular domain
  • LDLa
  • tail domain
  • Coagulation Factor Xa inhibitory site
  • extracellular domain
  • beta propeller
  • protease binding
  • ectodomain
  • Epidermal growth factor precursor homology domain
  • O-linked sugar region
  • protein binding
  • Low-density lipoprotein receptor repeat class B
  • very-low-density lipoprotein receptor
  • beta-amyloid binding
  • EGF-like domain
  • sorting signal domain
  • transmembrane/cytoplasmic domain
  • cytosolic tail domain
  • low-density lipoprotein receptor
  • Low-density lipoprotein-receptor YWTD domain
  • transporter

Pathways

Biological processes and signaling networks where the LDLR gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • non-insulin-dependent diabetes mellitus
  • atherosclerosis
  • fibrosis
  • diabetic nephropathy
  • coronary disease
  • edema
  • familial hypercholesterolemia
  • familial hyperlipoproteinemia type IIa
  • atherogenesis
  • plaque psoriasis
regulated by
  • NPC1
  • TNF
  • oxidized 1-palmitoyl-2-arachidonoyl-sn-glycero-3-phosphocholine
  • lipopolysaccharide
  • beta-estradiol
  • IL1B
  • IFNG
  • dithiothreitol
  • heavy metal
  • lovastatin
regulates
role in cell
  • cell death
  • expression in
  • accumulation in
  • production in
  • apoptosis
  • cellular infiltration by
  • necrosis
  • proliferation
  • activation in
  • phosphorylation in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • membrane fraction
  • pH resistant lipid raft fraction
  • proximal axon
  • endocytic vesicle membrane
  • intracellular membrane-bounded organelle
  • Cytoplasm
  • cell surface
  • cell periphery
  • intracellular space
  • apical compartment
  • somatodendritic region
  • perinuclear region
  • membrane surface
  • cellular membrane
  • endosomes
  • vesicles
  • lysosome
  • Golgi Apparatus
  • granules
  • basolateral cytoplasm
  • plasma membrane extracellular face
  • apical membrane
  • caveolae
  • basolateral membrane
  • lateral plasma membrane
  • pre-lysosomal compartments
  • lysosome membrane
  • endosomal membrane
  • growth cone
  • recycling endosomes
  • early endosomes
  • late endosomes
  • endocytotic vesicle
  • clathrin-coated pits
  • dendrites
  • sorting endosomes

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human LDLR gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • viral entry into host cell
  • cholesterol import
  • receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport
  • cholesterol metabolic process
  • lipoprotein catabolic process
  • cholesterol homeostasis
  • regulation of protein metabolic process
  • beta-amyloid clearance
  • cellular response to fatty acid
  • negative regulation of receptor recycling
  • regulation of phosphatidylcholine catabolic process
  • cholesterol transport
  • negative regulation of protein metabolic process
  • low-density lipoprotein particle clearance
  • plasma lipoprotein particle clearance
  • positive regulation of inflammatory response
  • high-density lipoprotein particle clearance
  • artery morphogenesis
  • endocytosis
  • receptor-mediated endocytosis
  • regulation of cholesterol metabolic process
  • long-term memory
  • negative regulation of gene expression
  • negative regulation of low-density lipoprotein particle clearance
  • positive regulation of triglyceride biosynthetic process
  • positive regulation of gene expression
  • lipid metabolic process
  • phagocytosis
  • phospholipid transport
  • intestinal cholesterol absorption
  • cellular response to low-density lipoprotein particle stimulus

Cellular Component

Where in the cell the gene product is active
  • endolysosome membrane
  • low-density lipoprotein particle
  • late endosome
  • external side of plasma membrane
  • Golgi apparatus
  • receptor complex
  • plasma membrane
  • cell surface
  • lysosome
  • early endosome
  • clathrin-coated endocytic vesicle membrane
  • apical part of cell
  • coated pit
  • membrane
  • endosome membrane
  • basolateral plasma membrane

Molecular Function

What the gene product does at the molecular level
  • clathrin heavy chain binding
  • identical protein binding
  • low-density lipoprotein receptor activity
  • protease binding
  • beta-amyloid binding
  • very-low-density lipoprotein particle receptor activity
  • protein binding
  • calcium ion binding
  • viral receptor activity
  • low-density lipoprotein particle binding
  • lipoprotein particle binding
  • binding, bridging

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