NPC1 Gene Summary [Human]

This gene encodes a large protein that resides in the limiting membrane of endosomes and lysosomes and mediates intracellular cholesterol trafficking via binding of cholesterol to its N-terminal domain. It is predicted to have a cytoplasmic C-terminus, 13 transmembrane domains, and 3 large loops in the lumen of the endosome - the last loop being at the N-terminus. This protein transports low-density lipoproteins to late endosomal/lysosomal compartments where they are hydrolized and released as free cholesterol. Defects in this gene cause Niemann-Pick type C disease, a rare autosomal recessive neurodegenerative disorder characterized by over accumulation of cholesterol and glycosphingolipids in late endosomal/lysosomal compartments.[provided by RefSeq, Aug 2009]

Details

Type
Protein Coding
Official Symbol
NPC1
Official Name
NPC intracellular cholesterol transporter 1 [Source:HGNC Symbol;Acc:HGNC:7897]
Ensembl ID
ENSG00000141458
Bio databases IDs NCBI: 4864 Ensembl: ENSG00000141458
Aliases NPC intracellular cholesterol transporter 1
Synonyms A430089E03Rik, Cdig2, D18Ertd139e, D18Ertd723e, lcsd, nmf164, NPC, NPC intracellular cholesterol transporter 1, POGZ, SLC65A1, SLC66A1, spm
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human NPC1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • cholesterol binding
  • signaling receptor activity
  • leucine zipper domain
  • protein binding
  • lipid transporter
  • Patched family
  • cytoplasmic domain
  • The Eukaryotic (Putative) Sterol Transporter (EST) Family
  • lumenal domain
  • Niemann-Pick C1 N terminus
  • transmembrane domain
  • Sterol-sensing domain of SREBP cleavage-activation
  • Niemann-Pick C type protein family
  • sterol sensing domain
  • transmembrane receptor
  • cysteine rich domain
  • transporter

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • weight loss
  • neoplasia
  • non-insulin-dependent diabetes mellitus
  • fibrosis
  • heart failure
  • cardiovascular disorder
  • Niemann-Pick disease type C1
  • coronary artery disease
  • Niemann-Pick disease type C
  • Niemann-Pick disease, type D
regulated by
  • NPC1
  • beta-estradiol
  • cholesterol
  • IGF2R
  • side-chain oxidized oxysterol
  • M6PR
  • CTBP2
  • HSP70
  • hydroxypropyl-beta-cyclodextrin
  • 8-bromo-cAMP
role in cell
  • growth
  • cell death
  • expression in
  • accumulation in
  • apoptosis
  • cellular infiltration by
  • necrosis
  • proliferation
  • phosphorylation in
  • survival

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • membrane fraction
  • endoplasmic reticulum mitochondria contact site
  • Extracellular Space
  • cell periphery
  • perinuclear region
  • cellular membrane
  • Plasma Membrane
  • endosomes
  • vesicles
  • lysosome
  • Golgi Apparatus
  • Endoplasmic Reticulum
  • granules
  • trans Golgi network
  • lysosome membrane
  • endosomal membrane
  • nuclear envelope
  • late endosomes
  • cytoplasmic vesicles
  • endocytotic vesicle
  • membrane rafts

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human NPC1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • viral entry into host cell
  • protein glycosylation
  • cholesterol metabolic process
  • neurogenesis
  • response to xenobiotic stimulus
  • cholesterol homeostasis
  • bile acid metabolic process
  • establishment of protein localization in membrane
  • adult walking behavior
  • cholesterol storage
  • autophagy
  • liver development
  • intracellular cholesterol transport
  • intracellular lipid transport
  • cholesterol transport
  • membrane raft organization
  • macroautophagy
  • lysosomal transport
  • response to cadmium ion
  • endocytosis
  • cellular response to steroid hormone stimulus
  • cyclodextrin metabolic process
  • gene expression
  • negative regulation of macroautophagy
  • intestinal cholesterol absorption
  • cholesterol efflux
  • programmed cell death
  • cellular response to low-density lipoprotein particle stimulus

Cellular Component

Where in the cell the gene product is active
  • Golgi apparatus
  • endoplasmic reticulum
  • extracellular region
  • plasma membrane
  • lysosomal membrane
  • lysosome
  • nuclear envelope
  • late endosome membrane
  • perinuclear region of cytoplasm
  • extracellular vesicular exosome
  • membrane raft
  • membrane

Molecular Function

What the gene product does at the molecular level
  • transmembrane signaling receptor activity
  • protein binding
  • cholesterol binding
  • lipid transporter activity
  • signaling receptor activity
  • viral receptor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.