RPS3 Gene Summary [Human]

Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit, where it forms part of the domain where translation is initiated. The protein belongs to the S3P family of ribosomal proteins. Studies of the mouse and rat proteins have demonstrated that the protein has an extraribosomal role as an endonuclease involved in the repair of UV-induced DNA damage. The protein appears to be located in both the cytoplasm and nucleus but not in the nucleolus. Higher levels of expression of this gene in colon adenocarcinomas and adenomatous polyps compared to adjacent normal colonic mucosa have been observed. This gene is co-transcribed with the small nucleolar RNA genes U15A and U15B, which are located in its first and fifth introns, respectively. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome. Multiple alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2012]

Details

Type
Retained Intron
Official Symbol
RPS3
Official Name
ribosomal protein S3 [Source:HGNC Symbol;Acc:HGNC:10420]
Ensembl ID
ENSG00000149273
Bio databases IDs NCBI: 6188 Ensembl: ENSG00000149273
Aliases ribosomal protein S3, IMR-90 ribosomal protein S3, 40S ribosomal protein S3
Synonyms 40s ribosomal subunit, D7Ertd795e, ribosomal protein S3, Rs 3, S3, S3-40S, uS3
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human RPS3 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Hsp70 protein binding
  • heat shock protein binding
  • transcription factor binding
  • enzyme
  • endonuclease
  • structural constituent of ribosome
  • KH domain
  • tubulin binding
  • Ribosomal protein S3, C-terminal domain
  • protein kinase A binding
  • protein kinase binding
  • rRNA binding
  • nucleic acid binding
  • mRNA binding
  • DNA-(apurinic or apyrimidinic site) lyase
  • enzyme binding
  • protein binding
  • sequence-specific DNA binding
  • ribosomal protein uS3, eukaryotic/archaeal type
  • DNA binding
  • RNA binding
  • microtubule binding
  • damaged DNA binding
  • kinase binding
  • binding protein
  • K homology (KH) RNA-binding domain, type I
  • double-stranded DNA binding

Pathways

Biological processes and signaling networks where the RPS3 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • breast cancer
  • rheumatoid arthritis
  • major depression
  • preeclampsia
  • lichen planus
  • mucopolysaccharidosis type IVB
  • alcoholism
regulated by
regulates
role in cell
  • cell death
  • proliferation
  • apoptosis
  • phosphorylation in
  • binding in
  • assembly
  • segregation
  • response by
  • function in
  • transcription in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • detergent resistant lipid raft fraction
  • multicilium
  • cellular membrane
  • ribosome
  • Nucleus
  • Plasma Membrane
  • Endoplasmic Reticulum
  • cytosol
  • membrane ruffles
  • mitochondrial matrix
  • mitochondrial inner membrane
  • nucleoplasm
  • nucleoli
  • synapse
  • mitotic spindle
  • dendrites
  • postsynaptic density
  • cytosolic fraction

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human RPS3 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • positive regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis
  • DNA repair
  • positive regulation of JUN kinase activity
  • base-excision repair
  • cytoplasmic translation
  • chromosome segregation
  • positive regulation of NF-kappaB transcription factor activity
  • cell division
  • spindle assembly
  • apoptotic process
  • cellular response to tumor necrosis factor
  • cellular response to hydrogen peroxide
  • negative regulation of protein ubiquitination
  • positive regulation of microtubule polymerization
  • negative regulation of translation
  • positive regulation of protein complex assembly
  • positive regulation of interleukin-2 production
  • positive regulation of DNA repair
  • negative regulation of DNA repair
  • regulation of apoptotic process
  • response to DNA damage stimulus
  • translational initiation
  • positive regulation of activated T cell proliferation
  • translation
  • positive regulation of T cell receptor signaling pathway
  • positive regulation of gene expression
  • positive regulation of endodeoxyribonuclease activity
  • cellular response to reactive oxygen species
  • positive regulation of apoptotic signaling pathway

Cellular Component

Where in the cell the gene product is active
  • postsynaptic density
  • cytosolic ribosome
  • cytosolic small ribosomal subunit
  • endoplasmic reticulum
  • nucleolus
  • ribosome
  • plasma membrane
  • mitochondrial inner membrane
  • nucleoplasm
  • nucleus
  • extracellular vesicular exosome
  • focal adhesion
  • mitotic spindle
  • mitochondrial matrix
  • cytoplasm
  • membrane
  • cytosol
  • ruffle membrane
  • NF-kappaB complex

Molecular Function

What the gene product does at the molecular level
  • tubulin binding
  • RNA polymerase II regulatory region sequence-specific DNA binding
  • endodeoxyribonuclease activity
  • supercoiled DNA binding
  • RNA binding
  • mRNA binding
  • DNA-(apurinic or apyrimidinic site) lyase activity
  • DNA N-glycosylase activity
  • kinase binding
  • Hsp70 protein binding
  • protein kinase binding
  • SSU rRNA binding
  • damaged DNA binding
  • microtubule binding
  • small protein conjugating enzyme binding
  • DNA binding
  • protein binding
  • structural constituent of ribosome
  • Hsp90 protein binding
  • iron-sulfur cluster binding
  • oxidized purine DNA binding
  • oxidized pyrimidine DNA binding
  • protein kinase A binding
  • enzyme binding

Gene-Specific Assays for Results You Can Trust

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