LSM1 Gene Summary [Human]

This gene encodes a member of the LSm family of RNA-binding proteins. LSm proteins form stable heteromers that bind specifically to the 3'-terminal oligo(U) tract of U6 snRNA and may play a role in pre-mRNA splicing by mediating U4/U6 snRNP formation. Increased expression of this gene may play a role in cellular transformation and the progression of several malignancies including lung cancer, mesothelioma and breast cancer. Alternatively spliced transcript variants have been observed for this gene, and a pseudogene of this gene is located on the short arm of chromosome 9. [provided by RefSeq, Nov 2011]

Details

Type
Protein Coding
Official Symbol
LSM1
Official Name
LSM1 homolog, mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:20472]
Ensembl ID
ENSG00000175324
Bio databases IDs NCBI: 27257 Ensembl: ENSG00000175324
Aliases LSM1 homolog, mRNA degradation associated, cancer-associated Sm protein
Synonyms 2810025O06Rik, CASM, LSM1 homolog, mRNA degradation associated, Sm, YJL124C
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human LSM1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Sm and related proteins
  • mRNA binding
  • protein binding
  • RNA binding

Pathways

Biological processes and signaling networks where the LSM1 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • breast carcinoma
  • breast cancer
  • gastric adenocarcinoma
  • gastric epithelial cancer
  • lupus nephritis
  • schizophrenia
  • neoplastic cell transformation
  • global developmental delay
regulated by
  • cisplatin
  • pristane
  • EGF
  • cycloheximide
  • paraquat
  • RUBCN
  • Hepatitis C virus JFH-1
  • SCp2 cells
  • ESR2
  • MMP3
regulates
role in cell
  • growth
  • differentiation
  • formation
  • accumulation in
  • cell cycle progression
  • maintenance

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • GW body
  • cytoplasmic mRNA processing body
  • Cytoplasm
  • cytosol
  • perikaryon
  • axons
  • dendrites

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human LSM1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • RNA splicing, via transesterification reactions
  • RNA splicing
  • stem cell maintenance
  • neuron differentiation
  • histone mRNA catabolic process
  • negative regulation of neuron differentiation
  • deadenylation-dependent decapping of nuclear-transcribed mRNA
  • mRNA processing

Cellular Component

Where in the cell the gene product is active
  • dendrite
  • nucleus
  • cytoplasm
  • cytoplasmic mRNA processing body
  • cytosol
  • neuronal cell body
  • axon

Molecular Function

What the gene product does at the molecular level
  • pre-mRNA binding
  • RNA binding
  • protein binding
  • mRNA binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.