HOXC4

HOXC4 Gene Summary

This gene belongs to the homeobox family of genes. The homeobox genes encode a highly conserved family of transcription factors that play an important role in morphogenesis in all multicellular organisms. Mammals possess four similar homeobox gene clusters, HOXA, HOXB, HOXC and HOXD, which are located on different chromosomes and consist of 9 to 11 genes arranged in tandem. This gene, HOXC4, is one of several homeobox HOXC genes located in a cluster on chromosome 12. Three genes, HOXC5, HOXC4 and HOXC6, share a 5' non-coding exon. Transcripts may include the shared exon spliced to the gene-specific exons, or they may include only the gene-specific exons. Two alternatively spliced variants that encode the same protein have been described for HOXC4. Transcript variant one includes the shared exon, and transcript variant two includes only gene-specific exons. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
HOXC4
Official Name
homeobox C4 [Source:HGNC Symbol;Acc:HGNC:5126]
Ensembl ID
ENSG00000198353
Bio databases IDs NCBI: 3221 Ensembl: ENSG00000198353
Aliases homeobox C4
Synonyms
cp19,homeobox C4,HOX3,Hox-3.5,HOX3E,Hox3r3,Hs.567289
Species
Human, Homo sapiens

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • RNA polymerase II transcription regulatory region sequence-specific binding transcriptional activator activity
  • RNA polymerase II transcription factor activity, sequence-specific DNA binding
  • transcription regulator
  • nucleic acid binding
  • double-stranded DNA binding
  • protein domain specific binding
  • protein binding
  • sequence-specific DNA binding
  • homeodomain

Pathways

Biological processes and signaling networks where the HOXC4 gene plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
  • TP63
  • NSD3
  • SOX2
  • HNRNPL
  • SNCA
  • ERBIN
  • SALL4
  • XRCC5
  • TSC1
  • RNH1
disease
  • cardiovascular disorder
  • non-insulin-dependent diabetes mellitus
  • chronic obstructive pulmonary disease
  • MYCN amplification negative neuroblastoma
  • neuroblastoma formation
  • rheumatoid arthritis
  • hypertension
  • lung adenocarcinoma
  • lung adenocarcinoma formation
  • osteoporosis
regulated by
  • TP63
  • beta-estradiol
  • INSR
  • RAR/RXR/retinoic acid
  • TNFSF13
  • BCOR
  • KAT6A
  • Cdkn2a
  • fulvestrant
  • metribolone
regulates
  • AICDA
  • IgG2b
  • RNA polymerase II
  • DNA promoter
  • DNA endogenous promoter
  • IgA
  • IgG1
  • WNT3A
  • FGFR3
  • IgE
role in cell
  • expression in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nucleoplasm
  • chromatin

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the HOXC4 gene, providing context for its role in the cell.

BIOLOGICAL PROCESS

Functions and activities the gene product is involved in
  • anterior/posterior pattern specification
  • positive regulation of transcription from RNA polymerase II promoter
  • embryonic skeletal system morphogenesis
  • cartilage development

CELLULAR COMPONENT

Where in the cell the gene product is active
  • chromatin
  • nucleoplasm

MOLECULAR FUNCTION

What the gene product does at the molecular level
  • HMG box domain binding
  • protein binding
  • RNA polymerase II core promoter proximal region sequence-specific DNA binding
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
  • sequence-specific DNA binding RNA polymerase II transcription factor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.