CDKN2A Gene Summary [Human]

This gene generates several transcript variants which differ in their first exons. At least three alternatively spliced variants encoding distinct proteins have been reported, two of which encode structurally related isoforms known to function as inhibitors of CDK4 kinase. The remaining transcript includes an alternate first exon located 20 Kb upstream of the remainder of the gene; this transcript contains an alternate open reading frame (ARF) that specifies a protein which is structurally unrelated to the products of the other variants. This ARF product functions as a stabilizer of the tumor suppressor protein p53 as it can interact with, and sequester, the E3 ubiquitin-protein ligase MDM2, a protein responsible for the degradation of p53. In spite of the structural and functional differences, the CDK inhibitor isoforms and the ARF product encoded by this gene, through the regulatory roles of CDK4 and p53 in cell cycle G1 progression, share a common functionality in cell cycle G1 control. This gene is frequently mutated or deleted in a wide variety of tumors, and is known to be an important tumor suppressor gene. [provided by RefSeq, Sep 2012]

Details

Type
Protein Coding
Official Symbol
CDKN2A
Official Name
cyclin dependent kinase inhibitor 2A [Source:HGNC Symbol;Acc:HGNC:1787]
Ensembl ID
ENSG00000147889
Bio databases IDs NCBI: 1029 Ensembl: ENSG00000147889
Aliases cyclin dependent kinase inhibitor 2A
Synonyms CAI2, CDK4I, CDKN2, CMM2, CYCLIN-DEPENDENT KINASE INHIBITOR 2A, INK4, INK4A, MLM, MTS-1, p16, p16/ARF, p16 INK4, p16/ INK4a, P19, PCTR1, TP16
Species
Human, Homo sapiens

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human CDKN2A often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • LXXLL motif
  • Ankyrin repeats (many copies)
  • transcription regulator
  • SUMO transferase activity
  • protein kinase binding
  • kinase interacting domain
  • N-terminal tail
  • NF-kappaB binding
  • enzyme inhibitor activity
  • Ankyrin repeats (3 copies)
  • transcription factor binding
  • protein domain specific binding
  • enzyme
  • p53 binding
  • enzyme regulator activity
  • protein binding
  • Mdm2 protein binding domain
  • kinase
  • cyclin-dependent protein kinase inhibitor activity
  • Cyclin-dependent kinase inhibitor 2a p19Arf N-terminus
  • nucleolar targeting motif

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • liver neoplasia
  • epithelial neoplasia
  • benign neoplasia
  • neoplasia
  • epithelial cancer
  • cancer
  • hyperplasia
  • lung adenocarcinoma formation
  • non-small cell lung cancer
  • cholangiocarcinoma cancer
regulated by
  • oridonin
  • dexamethasone
  • DNA methyltransferase
  • DNMT3B
  • HMGB1
  • 5-azacytidine
  • tetrachlorodibenzodioxin
  • 26S proteasome
  • RELA
  • WNT3A
regulates
role in cell
  • survival
  • differentiation
  • phosphorylation in
  • tubulation
  • migration
  • activation in
  • adhesion
  • production in
  • expression in
  • binding in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • chromatin fraction
  • nuclear matrix fraction
  • heterochromatin
  • Cytoplasm
  • nucleolar region
  • cell surface
  • focal adhesions
  • Plasma Membrane
  • Mitochondria
  • granules
  • cytosol
  • mitochondrial matrix
  • prenucleolar bodies
  • nucleoplasm
  • nucleolus derived foci
  • nucleoli
  • nuclear bodies
  • mitotic figures
  • nuclear speckles

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human CDKN2A gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • positive regulation of smooth muscle cell apoptotic process
  • replicative senescence
  • negative regulation of immature T cell proliferation in thymus
  • protein sumoylation
  • negative regulation of cell proliferation
  • cellular senescence
  • rRNA processing
  • positive regulation of transcription from RNA polymerase II promoter
  • regulation of cyclin-dependent protein kinase activity
  • negative regulation of ubiquitin-protein ligase activity
  • negative regulation of B cell proliferation
  • apoptotic mitochondrial changes
  • negative regulation of transcription, DNA-dependent
  • somatic stem cell division
  • positive regulation of transcription, DNA-dependent
  • negative regulation of cell growth
  • positive regulation of protein sumoylation
  • positive regulation of macrophage apoptotic process
  • activation of cysteine-type endopeptidase activity involved in apoptotic process
  • regulation of cell cycle
  • negative regulation of protein neddylation
  • negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
  • negative regulation of NF-kappaB transcription factor activity
  • protein polyubiquitination
  • Ras protein signal transduction
  • negative regulation of cyclin-dependent protein kinase activity
  • negative regulation of phosphorylation
  • protein destabilization
  • regulation of protein stability
  • negative regulation of cell-matrix adhesion
  • positive regulation of gene expression
  • positive regulation of apoptotic process
  • protein K63-linked ubiquitination
  • regulation of G1/S transition of mitotic cell cycle
  • protein stabilization

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • mitochondrial matrix
  • cytoplasm
  • cytosol
  • nucleolus
  • senescence-associated heterochromatin focus
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • NF-kappaB binding
  • protein kinase binding
  • DNA binding
  • RNA binding
  • protein binding
  • cyclin-dependent protein kinase inhibitor activity
  • ubiquitin-protein ligase inhibitor activity
  • SUMO ligase activity

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