XRCC5 Gene Summary [Human]

The protein encoded by this gene is the 80-kilodalton subunit of the Ku heterodimer protein which is also known as ATP-dependant DNA helicase II or DNA repair protein XRCC5. Ku is the DNA-binding component of the DNA-dependent protein kinase, and it functions together with the DNA ligase IV-XRCC4 complex in the repair of DNA double-strand break by non-homologous end joining and the completion of V(D)J recombination events. This gene functionally complements Chinese hamster xrs-6, a mutant defective in DNA double-strand break repair and in ability to undergo V(D)J recombination. A rare microsatellite polymorphism in this gene is associated with cancer in patients of varying radiosensitivity. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
XRCC5
Official Name
X-ray repair cross complementing 5 [Source:HGNC Symbol;Acc:HGNC:12833]
Ensembl ID
ENSG00000079246
Bio databases IDs NCBI: 7520 Ensembl: ENSG00000079246
Aliases X-ray repair cross complementing 5, Ku autoantigen, 80kDa
Synonyms CTC85, CTCBF, KARP-1, KU80, Ku86, KUB2, KU (p70/p80) subunit, Kup80, NFIV, X-ray repair complementing defective repair in Chinese hamster cells 5, X-ray repair cross complementing 5
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human XRCC5 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Ku N-terminal vWA domain
  • Ku70/Ku80 C-terminal arm
  • ubiquitin protein ligase binding
  • Ku70/Ku80 beta-barrel domain
  • nucleic acid binding
  • nuclear localization sequence
  • Ku C terminal domain like
  • enzyme
  • protein binding
  • DNA dependent ATPase
  • enzyme activator activity
  • sequence-specific DNA binding
  • ATPase
  • carbon-oxygen lyase
  • DNA end binding
  • telomeric DNA binding
  • DNA helicase
  • RNA binding
  • binding protein
  • KU
  • double-stranded telomeric DNA binding
  • double-stranded DNA binding
  • vWFA
  • snoRNA binding

Pathways

Biological processes and signaling networks where the XRCC5 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • non-Hodgkin disease
  • head and neck cancer
  • cancer
  • tumorigenesis
  • proportional dwarfism
  • growth failure
  • gastrointestinal neoplasia
  • T-cell non-Hodgkin disease
  • T cell cancer
  • lymphomagenesis
regulated by
role in cell
  • expression in
  • damage in
  • accumulation in
  • cell viability
  • phosphorylation in
  • apoptosis
  • proliferation
  • number
  • growth
  • production in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • pre-ribosome
  • secretory granule lumen
  • Cytoplasm
  • Extracellular Space
  • Plasma Membrane
  • cytosol
  • nucleoplasm
  • nucleoli
  • nuclear envelope
  • telomeres
  • chromatin

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human XRCC5 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • neurogenesis
  • response to xenobiotic stimulus
  • double-strand break repair via nonhomologous end joining
  • double-strand break repair
  • regulation of smooth muscle cell proliferation
  • cellular hyperosmotic salinity response
  • negative regulation of transcription, DNA-dependent
  • cellular response to fatty acid
  • activation of innate immune response
  • DNA duplex unwinding
  • regulation of telomere maintenance
  • small-subunit processome assembly
  • recombinational repair
  • DNA recombination
  • telomere maintenance
  • hemopoietic stem cell differentiation
  • response to DNA damage stimulus
  • positive regulation of telomerase activity
  • cellular response to gamma radiation
  • cellular response to X-ray
  • positive regulation of catalytic activity
  • positive regulation of protein kinase activity
  • innate immune response
  • protein localization to chromosome, telomeric region
  • positive regulation of telomere maintenance via telomerase
  • hemopoietic stem cell proliferation
  • positive regulation of neurogenesis

Cellular Component

Where in the cell the gene product is active
  • small-subunit processome
  • DNA-dependent protein kinase complex
  • nonhomologous end joining complex
  • Ku70:Ku80 complex
  • extracellular region
  • nucleolus
  • plasma membrane
  • nuclear telomere cap complex
  • nucleoplasm
  • chromosome, telomeric region
  • nucleus
  • DNA-dependent protein kinase-DNA ligase 4 complex
  • membrane
  • protein-DNA complex
  • cytosol
  • secretory granule lumen
  • macromolecular complex

Molecular Function

What the gene product does at the molecular level
  • ATPase activity
  • DNA-dependent ATPase activity
  • DNA end binding
  • double-stranded DNA binding
  • double-stranded telomeric DNA binding
  • transcription regulatory region sequence-specific DNA binding
  • enzyme activator activity
  • damaged DNA binding
  • DNA binding
  • ATP binding
  • DNA helicase activity
  • RNA binding
  • protein binding
  • ubiquitin protein ligase binding
  • 5'-deoxyribose-5-phosphate lyase activity
  • telomeric DNA binding
  • U3 snoRNA binding

Gene-Specific Assays for Results You Can Trust

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