Cldn6 Gene Summary [Mouse]

This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets, and also play critical roles in maintaining cell polarity and signal transductions. The protein encoded by this gene is essential for blastocyst formation in preimplantation mouse embryos, and is invloved in and is crucial for the formation and maintenance of the epidermal permeability barrier. This gene is adjacent to another family member Cldn9 on chromosome 17. [provided by RefSeq, Aug 2010]

Details

Type
Protein Coding
Official Symbol
Cldn6
Official Name
claudin 6 [Source:MGI Symbol;Acc:MGI:1859284]
Ensembl ID
ENSMUSG00000023906
Bio databases IDs NCBI: 54419 Ensembl: ENSMUSG00000023906
Aliases claudin 6
Synonyms claudin 6
Species
Mouse, Mus musculus
OrthologiesHumanRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in mouse Cldn6 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • viral receptor
  • PMP-22/EMP/MP20/Claudin family
  • extracellular loop
  • protein binding
  • cytosolic tail domain
  • identical protein binding

Pathways

Biological processes and signaling networks where the Cldn6 gene in mouse plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
disease
  • desmoplastic small round cell tumor
  • soft tissue sarcoma cancer
  • colon adenocarcinoma
  • colon epithelial cancer
  • yolk sac neoplasm
  • germ cell neoplasia
regulated by
regulates
role in cell
  • expression in
  • binding in
  • phosphorylation in
  • proliferation
  • organization
  • cell-to-cell spreading
  • cell-to-cell spreading in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • apicolateral membrane
  • cellular membrane
  • tight junctions

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the mouse Cldn6 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • viral entry into host cell
  • calcium-independent cell-cell adhesion
  • tight junction assembly
  • cell adhesion

Cellular Component

Where in the cell the gene product is active
  • apicolateral plasma membrane
  • tight junction
  • plasma membrane

Molecular Function

What the gene product does at the molecular level
  • identical protein binding
  • protein binding
  • structural molecule activity
  • viral receptor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.