Pbx1 Gene Summary [Rat]

This gene encodes a nuclear protein that belongs to the PBX homeobox family of transcriptional factors. Studies in mice suggest that this gene may be involved in the regulation of osteogenesis and required for skeletal patterning and programming. A chromosomal translocation, t(1;19) involving this gene and TCF3/E2A gene, is associated with pre-B-cell acute lymphoblastic leukemia. The resulting fusion protein, in which the DNA binding domain of E2A is replaced by the DNA binding domain of this protein, transforms cells by constitutively activating transcription of genes regulated by the PBX protein family. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jun 2017]

Details

Type
Protein Coding
Official Symbol
Pbx1
Official Name
PBX homeobox 1 [Source:RGD Symbol;Acc:1308213]
Ensembl ID
ENSRNOG00000004693
Bio databases IDs NCBI: 304947 Ensembl: ENSRNOG00000004693
Aliases PBX homeobox 1
Synonyms 2310056B04RIK, CAKUHED, D230003C07Rik, LOC100131938, PBX homeobox 1, pre B cell leukaemia homeobox 1, pre B cell leukemia homeobox 1
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Pbx1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • RNA polymerase II transcription regulatory region sequence-specific binding transcriptional activator activity
  • transcription regulator
  • PBC domain
  • nuclear export signal
  • DNA binding domain
  • nucleic acid binding
  • alpha helix
  • transcription factor binding
  • inhibitory domain
  • protein binding
  • sequence-specific DNA binding
  • Hox cooperativity motif
  • DNA binding
  • RNA polymerase II transcription factor activity, sequence-specific DNA binding
  • TALE motif
  • double-stranded DNA binding
  • homodimerization domain
  • heterodimerization domain
  • homeodomain

Pathways

Biological processes and signaling networks where the Pbx1 gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • cancer
  • anemia
  • colorectal cancer
  • acute myeloid leukemia
  • congenital anomalies of kidney and urinary tract syndrome with abnormal ears or developmental delay with or without hearing loss
  • hypoplasia
  • cleft lip
  • tumorigenesis
  • edema
regulated by
role in cell
  • activation in
  • expression in
  • phosphorylation in
  • apoptosis
  • proliferation
  • growth
  • differentiation
  • formation
  • cell viability
  • migration

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • Cytoplasm
  • nucleoplasm
  • chromatin

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Pbx1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • embryonic hemopoiesis
  • anterior/posterior pattern specification
  • negative regulation of neuron differentiation
  • spleen development
  • positive regulation of transcription from RNA polymerase II promoter
  • proximal/distal pattern formation
  • thymus development
  • embryonic limb morphogenesis
  • sex differentiation
  • G2/M transition of mitotic cell cycle
  • stem cell proliferation
  • adrenal gland development
  • positive regulation of G2/M transition of mitotic cell cycle
  • embryonic organ development
  • brain development
  • neuron development
  • steroid biosynthetic process
  • embryonic skeletal system development
  • regulation of transcription from RNA polymerase II promoter
  • organ morphogenesis
  • eye development
  • urogenital system development
  • natural killer cell differentiation
  • positive regulation of stem cell proliferation
  • branching involved in ureteric bud morphogenesis
  • regulation of ossification

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • cytoplasm
  • chromatin
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • transcription corepressor binding
  • DNA binding
  • transcription cofactor binding
  • sequence-specific DNA binding transcription factor activity
  • protein binding
  • RNA polymerase II core promoter proximal region sequence-specific DNA binding
  • RNA polymerase II regulatory region sequence-specific DNA binding
  • transcription regulatory region sequence-specific DNA binding
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
  • sequence-specific DNA binding RNA polymerase II transcription factor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.