Cxcr6 Gene Summary [Rat]

The protein encoded by this gene is a G protein-coupled receptor with seven transmembrane domains that belongs to the CXC chemokine receptor family. This family also includes CXCR1, CXCR2, CXCR3, CXCR4, CXCR5, and CXCR7. This gene, which maps to the chemokine receptor gene cluster, is expressed in several T lymphocyte subsets and bone marrow stromal cells. The encoded protein and its exclusive ligand, chemokine ligand 16 (CCL16), are part of a signalling pathway that regulates T lymphocyte migration to various peripheral tissues (the liver, spleen red pulp, intestine, lungs, and skin) and promotes cell-cell interaction with dendritic cells and fibroblastic reticular cells. CXCR6/CCL16 also controls the localization of resident memory T lymphocytes to different compartments of the lung and maintains airway resident memory T lymphocytes, which are an important first line of defense against respiratory pathogens. The encoded protein serves as an entry coreceptor used by HIV-1 and SIV to enter target cells, in conjunction with CD4. [provided by RefSeq, Aug 2020]

Details

Type
Protein Coding
Official Symbol
Cxcr6
Official Name
C-X-C motif chemokine receptor 6 [Source:RGD Symbol;Acc:1642118]
Ensembl ID
ENSRNOG00000006319
Bio databases IDs NCBI: 100124593 Ensembl: ENSRNOG00000006319
Aliases C-X-C motif chemokine receptor 6
Synonyms BONZO, CD186, CDw186, C-X-C motif chemokine receptor 6, STRL33, TYMSTR
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Cxcr6 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • G-protein coupled receptor
  • C-X-C chemokine binding
  • C-X-C chemokine receptor
  • Cholecystokinin A receptor, N-terminal
  • 7 transmembrane receptor (rhodopsin family)
  • seven-transmembrane G protein-coupled receptor superfamily
  • coreceptor

Pathways

Biological processes and signaling networks where the Cxcr6 gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • metastasis
  • cancer
  • atherosclerosis
  • glioblastoma
  • glioblastoma cancer
  • COVID-19
  • brain cancer
  • central nervous system cancer
  • head and neck cancer
  • head and neck neoplasia
regulated by
regulates
role in cell
  • quantity
  • trafficking
  • replication in
  • recognition by
  • homing
  • fusion
  • mobilization in
  • persistence

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • cell surface
  • cellular membrane

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Cxcr6 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • inflammatory response
  • immune response
  • G-protein coupled receptor signaling pathway
  • chemokine-mediated signaling pathway
  • viral genome replication
  • calcium-mediated signaling
  • cell chemotaxis
  • elevation of cytosolic calcium ion concentration

Cellular Component

Where in the cell the gene product is active
  • external side of plasma membrane
  • plasma membrane

Molecular Function

What the gene product does at the molecular level
  • C-C chemokine binding
  • coreceptor activity
  • G-protein coupled receptor activity
  • C-C chemokine receptor activity
  • C-X-C chemokine receptor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.