Rdh5 Gene Summary [Rat]

This gene encodes an enzyme belonging to the short-chain dehydrogenases/reductases (SDR) family. This retinol dehydrogenase functions to catalyze the final step in the biosynthesis of 11-cis retinaldehyde, which is the universal chromophore of visual pigments. Mutations in this gene cause autosomal recessive fundus albipunctatus, a rare form of night blindness that is characterized by a delay in the regeneration of cone and rod photopigments. Alternative splicing results in multiple transcript variants. Read-through transcription also exists between this gene and the neighboring upstream BLOC1S1 (biogenesis of lysosomal organelles complex-1, subunit 1) gene. [provided by RefSeq, Dec 2010]

Details

Type
Protein Coding
Official Symbol
Rdh5
Official Name
retinol dehydrogenase 5 [Source:RGD Symbol;Acc:1308849]
Ensembl ID
ENSRNOG00000053850
Bio databases IDs NCBI: 366791 Ensembl: ENSRNOG00000053850
Aliases retinol dehydrogenase 5
Synonyms 9-cis, 9cRDH, cRDH, HSD17B9, RDH1, RDH2, RDH4, retinol dehydrogenase 5, RoDH1, RODH5, SDR9C5
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Rdh5 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Rossmann-fold NAD(P)(+)-binding proteins
  • 3alpha(or 20beta)-hydroxysteroid dehydrogenase
  • 11-cis-retinol dehydrogenase
  • retinol dehydrogenase
  • protein homodimerization
  • 3(or 17)alpha-hydroxysteroid dehydrogenase
  • enzyme
  • Enoyl-(Acyl carrier protein) reductase
  • short chain dehydrogenase

Pathways

Biological processes and signaling networks where the Rdh5 gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • retinal detachment
  • preeclampsia
  • retinal dystrophy
  • congenital stationary night blindness
  • COVID-19
  • refractive error
  • fundus albipunctatus
  • retinopathy
  • optic atrophy
  • myopia
regulated by
regulates
  • synthetic promoter
  • 11/13-cis-retinyl ester
  • alitretinoin
  • 9-cis-retinol
  • 11-cis-retinyl esters
  • 9-cis-retinal
  • dihydrotestosterone
  • 3-alpha,17-beta-androstanediol
  • 13-cis-retinyl esters
  • 13-cis-retinol
role in cell
  • resensitization

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • cellular membrane
  • Endoplasmic Reticulum
  • endoplasmic reticulum membrane
  • endoplasmic reticulum lumen
  • microsome
  • Golgi membrane
  • microsomal membrane
  • perikaryon

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Rdh5 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • retinoid metabolic process
  • retinol metabolic process
  • steroid metabolic process
  • visual perception

Cellular Component

Where in the cell the gene product is active
  • endoplasmic reticulum membrane
  • endoplasmic reticulum lumen
  • intracellular membrane-bounded organelle
  • cell body

Molecular Function

What the gene product does at the molecular level
  • androstan-3-alpha,17-beta-diol dehydrogenase activity
  • retinol dehydrogenase activity
  • protein homodimerization activity
  • androsterone dehydrogenase activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.