CDH13

CDH13 Gene Summary

This gene encodes a member of the cadherin superfamily. The encoded protein is localized to the surface of the cell membrane and is anchored by a GPI moiety, rather than by a transmembrane domain. The protein lacks the cytoplasmic domain characteristic of other cadherins, and so is not thought to be a cell-cell adhesion glycoprotein. This protein acts as a negative regulator of axon growth during neural differentiation. It also protects vascular endothelial cells from apoptosis due to oxidative stress, and is associated with resistance to atherosclerosis. The gene is hypermethylated in many types of cancer. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, May 2011]

Details

Type
Protein Coding
Official Symbol
CDH13
Official Name
cadherin 13 [Source:HGNC Symbol;Acc:HGNC:1753]
Ensembl ID
ENSG00000140945
Bio databases IDs NCBI: 1012 Ensembl: ENSG00000140945
Aliases cadherin 13, T-cadherin, H-cadherin (heart)
Synonyms
4932416G01Rik,CADHERIN 13,CDHH,Cdht,H-cadherin,Heart-cadherin,P105,T-CAD,T-CADHERIN,Truncated-cadherin
Species
Human, Homo sapiens

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • extracellular domain
  • Bacterial cadherin-like domain
  • hormone binding
  • binding protein
  • Cadherin prodomain like
  • Cadherin repeat-like domain
  • cadherin binding
  • protein binding
  • low-density lipoprotein binding
  • identical protein binding

Pathways

Biological processes and signaling networks where the CDH13 gene plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
  • HDAC6
  • EGFR
  • CHEK2
  • RNF207
  • TUBB8
  • GPM6A
  • ERBB2
  • UQCC1
  • TRIM67
  • ANXA1
disease
  • acute myeloid leukemia
  • hypertension
  • heart disease
  • Alzheimer disease
  • schizophrenia
  • uterine serous papillary cancer
  • coronary artery disease
  • scarlet fever
  • oral squamous cell carcinoma
  • squamous cell cancer of the oral cavity
regulated by
  • IFNG
  • TNF
  • LDB1
  • IL10
  • EGF
  • SNCA
  • SB203580
  • CHUK
  • LMO2
  • CREB1
regulates
  • GSK3B
  • EGFR
  • AKT
  • Ca2+
  • CCND1
  • CTNNB1
  • AKT3
  • CDKN1A
  • IL13
  • Ccl11
role in cell
  • growth
  • proliferation
  • phosphorylation in
  • survival
  • quantity
  • formation
  • migration
  • invasion by
  • endocytosis by
  • G2/M phase

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • pH resistant lipid raft fraction
  • detergent resistant lipid raft fraction
  • Cytoplasm
  • cell surface
  • Extracellular Space
  • perinuclear region
  • cellular membrane
  • cell-cell contacts
  • plasma membrane extracellular face
  • caveolae
  • neurites
  • synapse
  • sarcolemma
  • perikaryon
  • lamellipodia

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the CDH13 gene, providing context for its role in the cell.

BIOLOGICAL PROCESS

Functions and activities the gene product is involved in
  • Rac protein signal transduction
  • low-density lipoprotein particle mediated signaling
  • adherens junction organization
  • multicellular organismal development
  • negative regulation of cell proliferation
  • sprouting angiogenesis
  • regulation of epidermal growth factor receptor signaling pathway
  • homophilic cell adhesion
  • endothelial cell migration
  • positive regulation of transcription from RNA polymerase II promoter
  • positive regulation of calcium-mediated signaling
  • positive regulation of smooth muscle cell proliferation
  • regulation of endocytosis
  • localization within membrane
  • cell migration
  • calcium-dependent cell-cell adhesion
  • keratinocyte proliferation
  • cell-cell junction assembly
  • cell morphogenesis
  • negative regulation of cell adhesion
  • positive regulation of positive chemotaxis
  • Rho protein signal transduction
  • positive regulation of cell-matrix adhesion
  • cell-cell adhesion mediated by cadherin
  • lamellipodium assembly
  • positive regulation of endothelial cell proliferation
  • positive regulation of cell migration

CELLULAR COMPONENT

Where in the cell the gene product is active
  • external side of plasma membrane
  • extracellular region
  • neuron projection
  • plasma membrane
  • extracellular space
  • adherens junction
  • caveola
  • extracellular vesicular exosome
  • perinuclear region of cytoplasm
  • focal adhesion
  • cytoplasm
  • catenin complex

MOLECULAR FUNCTION

What the gene product does at the molecular level
  • identical protein binding
  • protein binding
  • calcium ion binding
  • cadherin binding
  • adiponectin binding
  • beta-catenin binding
  • lipoprotein particle binding
  • low-density lipoprotein particle binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.