VPS41 Gene Summary [Human]

Vesicle mediated protein sorting plays an important role in segregation of intracellular molecules into distinct organelles. Genetic studies in yeast have identified more than 40 vacuolar protein sorting (VPS) genes involved in vesicle transport to vacuoles. This gene encodes the human ortholog of yeast Vps41 protein which is also conserved in Drosophila, tomato, and Arabidopsis. Expression studies in yeast and human indicate that this protein may be involved in the formation and fusion of transport vesicles from the Golgi. Several transcript variants encoding different isoforms have been described for this gene, however, the full-length nature of not all is known. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
VPS41
Official Name
VPS41 subunit of HOPS complex [Source:HGNC Symbol;Acc:HGNC:12713]
Ensembl ID
ENSG00000006715
Bio databases IDs NCBI: 27072 Ensembl: ENSG00000006715
Aliases VPS41 subunit of HOPS complex
Synonyms HVPS41, hVps41p, HVSP41, mVam2, RGD1560511, SCAR29, Vam2, VPS41 HOPS complex subunit, VPS41 subunit of HOPS complex
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human VPS41 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • microtubule binding
  • RING finger (Really Interesting New Gene) domain and U-box domain superfamily
  • Region in Clathrin and VPS
  • protein binding
  • Clathrin heavy chain repeat homology
  • identical protein binding
  • transporter

Pathways

Biological processes and signaling networks where the VPS41 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • depressive disorder
  • major depression
  • colorectal cancer
  • autosomal recessive spinocerebellar ataxia type 29
  • hyper-IgD syndrome
  • neuroticism
  • infection by feline infectious peritonitis virus
  • infection by murine hepatitis virus
regulated by
regulates
role in cell
  • fusion
  • transport
  • dipeptide repeat protein sensitivity
  • pravastatin resistance

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • microtubule cytoskeleton
  • cellular membrane
  • vesicles
  • lysosome
  • Golgi Apparatus
  • microtubules
  • cytosol
  • lysosome membrane
  • endosomal membrane
  • early endosomes
  • late endosomes
  • clathrin-coated vesicles

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human VPS41 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • regulation of SNARE complex assembly
  • vesicle-mediated transport
  • endosome to lysosome transport
  • endosomal vesicle fusion
  • cellular response to starvation
  • protein targeting to vacuole
  • macroautophagy

Cellular Component

Where in the cell the gene product is active
  • microtubule cytoskeleton
  • late endosome
  • Golgi apparatus
  • lysosomal membrane
  • lysosome
  • early endosome membrane
  • late endosome membrane
  • cytosol
  • endosome membrane
  • AP-3 adaptor complex
  • clathrin-coated vesicle
  • clathrin complex
  • HOPS complex

Molecular Function

What the gene product does at the molecular level
  • identical protein binding
  • protein binding
  • metal ion binding
  • microtubule binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.