ALX4 Gene Summary [Human]

This gene encodes a paired-like homeodomain transcription factor expressed in the mesenchyme of developing bones, limbs, hair, teeth, and mammary tissue. Mutations in this gene cause parietal foramina 2 (PFM2); an autosomal dominant disease characterized by deficient ossification of the parietal bones. Mutations in this gene also cause a form of frontonasal dysplasia with alopecia and hypogonadism; suggesting a role for this gene in craniofacial development, mesenchymal-epithelial communication, and hair follicle development. Deletion of a segment of chromosome 11 containing this gene, del(11)(p11p12), causes Potocki-Shaffer syndrome (PSS); a syndrome characterized by craniofacial anomalies, cognitive disability, multiple exostoses, and genital abnormalities in males. In mouse, this gene has been shown to use dual translation initiation sites located 16 codons apart. [provided by RefSeq, Oct 2009]

Details

Type
Protein Coding
Official Symbol
ALX4
Official Name
ALX homeobox 4 [Source:HGNC Symbol;Acc:HGNC:450]
Ensembl ID
ENSG00000052850
Bio databases IDs NCBI: 60529 Ensembl: ENSG00000052850
Aliases ALX homeobox 4
Synonyms ALX homeobox 4, aristaless-like homeobox 4, CRS5, FND2, lst
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human ALX4 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • OAR motif
  • RNA polymerase II transcription regulatory region sequence-specific binding transcriptional activator activity
  • transcription regulator
  • nucleic acid binding
  • protein domain specific binding
  • protein binding
  • sequence-specific DNA binding
  • proline rich domain
  • Sh3 domain binding motif
  • RNA polymerase II transcription factor activity, sequence-specific DNA binding
  • double-stranded DNA binding
  • homeodomain
  • transcription factor activity

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • breast cancer
  • developmental disorder
  • parietal foramina 2
  • hereditary disorder
  • frontonasal dysplasia type 2
  • herniation
  • exencephaly
  • polydactyly
  • eyelids open at birth
  • susceptibility to craniosynostosis 5
regulated by
regulates
  • reporter gene
  • NCAM1
  • DNA promoter
  • DNA endogenous promoter
  • RNA polymerase II
role in cell
  • apoptosis
  • proliferation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • nucleoplasm
  • chromatin

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human ALX4 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • palate development
  • post-embryonic development
  • anterior/posterior pattern specification
  • regulation of apoptotic process
  • positive regulation of transcription from RNA polymerase II promoter
  • embryonic skeletal system morphogenesis
  • regulation of transcription from RNA polymerase II promoter
  • embryonic digit morphogenesis
  • muscle organ development
  • skeletal system development
  • hair follicle development
  • digestive tract development
  • embryonic forelimb morphogenesis
  • embryonic hindlimb morphogenesis

Cellular Component

Where in the cell the gene product is active
  • transcription factor complex
  • nucleus
  • chromatin
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • DNA binding
  • HMG box domain binding
  • protein binding
  • RNA polymerase II regulatory region sequence-specific DNA binding
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
  • sequence-specific DNA binding RNA polymerase II transcription factor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.