DDX39A Gene Summary [Human]

This gene encodes a member of the DEAD box protein family. These proteins are characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD) and are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure, such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of the DEAD box protein family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene is thought to play a role in the prognosis of patients with gastrointestinal stromal tumors. A pseudogene of this gene is present on chromosome 13. Alternate splicing results in multiple transcript variants. Additional alternatively spliced transcript variants of this gene have been described, but their full-length nature is not known. [provided by RefSeq, Sep 2013]

Details

Type
Retained Intron
Official Symbol
DDX39A
Official Name
DExD-box helicase 39A [Source:HGNC Symbol;Acc:HGNC:17821]
Ensembl ID
ENSG00000123136
Bio databases IDs NCBI: 10212 Ensembl: ENSG00000123136
Aliases DExD-box helicase 39A, UAP56-related helicase, 49 kDa
Synonyms 2610307C23Rik, BAT1, BAT1L, DDX39, DDXL, DEAD box helicase 39a, DEAD-box protein 39, DExD-box helicase 39A, URH49
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human DDX39A often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • helicase superfamily c-terminal domain
  • DEAD/DEAH box helicase
  • N-terminal helicase domain of the DEAD-box helicase superfamily
  • enzyme
  • protein binding
  • DEAD-like helicases superfamily
  • identical protein binding
  • Helicase conserved C-terminal domain
  • ATPase
  • P-loop containing Nucleoside Triphosphate Hydrolases
  • RNA binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • colorectal cancer
  • liver cancer
  • colon carcinoma
  • colon epithelial cancer
  • Waldenström macroglobulinemia
  • colon cancer
  • epidermal hyperplasia
  • psoriasis
  • lung cancer
regulated by
role in cell
  • differentiation
  • replication in
  • colony formation by
  • splicing by
  • proliferation in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • Cytoplasm
  • spliceosomes
  • nucleoplasm
  • nucleoli
  • interchromatin granule clusters
  • nuclear speckles

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human DDX39A gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • mRNA export from nucleus
  • RNA export from nucleus
  • nuclear mRNA splicing, via spliceosome

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • cytoplasm
  • nuclear speck
  • membrane
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • ATPase activity
  • ATP binding
  • identical protein binding
  • RNA binding
  • protein binding
  • RNA helicase activity
  • mRNA binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.