CLOCK Gene Summary [Human]

The protein encoded by this gene plays a central role in the regulation of circadian rhythms. The protein encodes a transcription factor of the basic helix-loop-helix (bHLH) family and contains DNA binding histone acetyltransferase activity. The encoded protein forms a heterodimer with ARNTL (BMAL1) that binds E-box enhancer elements upstream of Period (PER1, PER2, PER3) and Cryptochrome (CRY1, CRY2) genes and activates transcription of these genes. PER and CRY proteins heterodimerize and repress their own transcription by interacting in a feedback loop with CLOCK/ARNTL complexes. Polymorphisms in this gene may be associated with behavioral changes in certain populations and with obesity and metabolic syndrome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]

Details

Type
Protein Coding
Official Symbol
CLOCK
Official Name
clock circadian regulator [Source:HGNC Symbol;Acc:HGNC:2082]
Ensembl ID
ENSG00000134852
Bio databases IDs NCBI: 9575 Ensembl: ENSG00000134852
Aliases clock circadian regulator, Circadian locomoter output cycles protein kaput
Synonyms 5330400M04Rik, bHLHe8, clock circadian regulator, KAT13D, LOC620729
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human CLOCK often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • RNA polymerase II transcription regulatory region sequence-specific binding transcriptional activator activity
  • transcription regulator
  • histone acetyltransferase
  • nucleic acid binding
  • PAS
  • basic Helix Loop Helix (bHLH) domain superfamily
  • transcription factor binding
  • chromatin binding
  • protein binding
  • basic helix loop helix/Per Arnt Sim domain
  • sequence-specific DNA binding
  • PAS fold
  • DNA binding
  • RNA polymerase II transcription factor activity, sequence-specific DNA binding
  • PAS domain
  • double-stranded DNA binding
  • TFIIS_I
  • helix loop helix domain
  • Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
  • Helix-loop-helix DNA-binding domain
  • transcription factor activity

Pathways

Biological processes and signaling networks where the CLOCK gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • male pattern hair loss
  • coronary artery disease
  • hyperactive behavior
  • weight loss
  • depressive disorder
  • obesity
  • bipolar disorder
  • fibrosis
  • infection by HIV-1
regulated by
  • cryptochrome
  • BMAL1
  • NR1D1:heme:Corepressors:CLOCK gene
  • tretinoin
  • HTT
  • fluoxetine
  • PER1
  • alitretinoin
  • TGF beta
  • EP300
regulates
role in cell
  • expression in
  • growth
  • survival
  • migration
  • recovery
  • response by
  • transactivation in
  • binding in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear chromatin
  • intracellular membrane-bounded organelle
  • Cytoplasm
  • cytosol
  • chromosome
  • sister chromatids
  • nucleoplasm
  • chromatin

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human CLOCK gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • positive regulation of transcription from RNA polymerase II promoter
  • regulation of circadian rhythm
  • positive regulation of NF-kappaB transcription factor activity
  • positive regulation of circadian rhythm
  • regulation of hair cycle
  • regulation of insulin secretion
  • circadian regulation of gene expression
  • chromatin remodeling
  • negative regulation of transcription, DNA-dependent
  • positive regulation of transcription, DNA-dependent
  • cellular response to ionizing radiation
  • signal transduction
  • regulation of type B pancreatic cell development
  • spermatogenesis
  • positive regulation of inflammatory response
  • regulation of transcription, DNA-dependent
  • protein acetylation
  • photoperiodism
  • circadian rhythm
  • regulation of transcription from RNA polymerase II promoter
  • DNA damage checkpoint
  • response to redox state
  • proteasomal ubiquitin-dependent protein catabolic process
  • negative regulation of glucocorticoid receptor signaling pathway

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • chromatoid body
  • intracellular membrane-bounded organelle
  • cytosol
  • chromosome
  • chromatin
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • chromatin DNA binding
  • DNA binding
  • histone acetyltransferase activity
  • sequence-specific DNA binding transcription factor activity
  • protein binding
  • RNA polymerase II core promoter proximal region sequence-specific DNA binding
  • protein dimerization activity
  • sequence-specific DNA binding
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
  • E-box binding
  • sequence-specific DNA binding RNA polymerase II transcription factor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.