ERCC6 Gene Summary [Human]

This gene encodes a DNA-binding protein that is important in transcription-coupled excision repair. The encoded protein has ATP-stimulated ATPase activity, interacts with several transcription and excision repair proteins, and may promote complex formation at DNA repair sites. Mutations in this gene are associated with Cockayne syndrome type B and cerebrooculofacioskeletal syndrome 1. Alternative splicing occurs between a splice site from exon 5 of this gene to the 3' splice site upstream of the open reading frame (ORF) of the adjacent gene, piggyback-derived-3 (GeneID:267004), which activates the alternative polyadenylation site downstream of the piggyback-derived-3 ORF. The resulting transcripts encode a fusion protein that shares sequence with the product of each individual gene. [provided by RefSeq, Mar 2016]

Details

Type
Processed Transcript
Official Symbol
ERCC6
Official Name
ERCC excision repair 6, chromatin remodeling factor [Source:HGNC Symbol;Acc:HGNC:3438]
Ensembl ID
ENSG00000225830
Bio databases IDs NCBI: 2074 Ensembl: ENSG00000225830
Aliases ERCC excision repair 6, chromatin remodeling factor, Cockayne syndrome B protein
Synonyms 4732403I04, ARMD5, C130058G22RIK, CKN2, COFS, COFS1, CSB, CSB-PGBD3, ERCC6-PGBD3, ERCC excision repair 6, chromatin remodeling factor, excision repair cross-complementing rodent repair deficiency, complementation group 6, FLJ13497, LOC282965, POF11, RAD26, UVSS1
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human ERCC6 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • transcription regulator
  • protein binding activity, bridging
  • SNF2-related domain
  • helicase superfamily c-terminal domain
  • ATP binding
  • enzyme binding
  • chromatin binding
  • protein binding
  • DNA dependent ATPase
  • sequence-specific DNA binding
  • Helicase conserved C-terminal domain
  • acidic domain
  • protein tyrosine kinase activator
  • DNA binding
  • nucleotide-binding domain
  • ATPase domain
  • protein kinase C conserved region 1 (C1 domain) superfamily
  • ubiquitin binding domain
  • Transposase IS4
  • N-terminal helicase domain of the DEAD-box helicase superfamily
  • DEAD-like helicases superfamily
  • P-loop containing Nucleoside Triphosphate Hydrolases

Pathways

Biological processes and signaling networks where the ERCC6 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • epithelial cancer
  • epithelial neoplasia
  • cancer
  • papillomatosis
  • benign neoplasia
  • rheumatoid arthritis
  • tumorigenesis
  • edema
  • microgliosis
regulated by
  • SUMO3
  • etoposide
  • SUMO2
  • tretinoin
  • dexamethasone
  • hydrogen peroxide
  • cisplatin
  • ERCC8
  • alpha-amanitin
  • adenosine triphosphate
regulates
role in cell
  • phosphorylation in
  • expression in
  • quantity
  • number
  • loss
  • proliferation
  • apoptosis
  • differentiation
  • cell viability
  • cell death

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • Mitochondria
  • microtubules
  • midbody
  • nucleoplasm
  • nucleoli
  • nuclear bodies
  • chromatin

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human ERCC6 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • multicellular organism growth
  • response to X-ray
  • negative regulation of double-strand break repair via nonhomologous end joining
  • base-excision repair
  • transcription elongation from RNA polymerase I promoter
  • positive regulation of transcription initiation from RNA polymerase II promoter
  • positive regulation of peptidyl-serine phosphorylation of STAT protein
  • transcription-coupled nucleotide-excision repair
  • transcription from RNA polymerase II promoter
  • neurogenesis
  • JNK cascade
  • positive regulation of transcription from RNA polymerase II promoter
  • response to toxin
  • positive regulation of transcription from RNA polymerase III promoter
  • positive regulation of transcription from RNA polymerase I promoter
  • response to oxidative stress
  • chromatin remodeling
  • photoreceptor cell maintenance
  • DNA protection
  • regulation of transcription elongation, DNA-dependent
  • response to gamma radiation
  • positive regulation of transcription elongation, DNA-dependent
  • positive regulation of DNA repair
  • pyrimidine dimer repair
  • neuron differentiation
  • regulation of transcription elongation from RNA polymerase II promoter
  • neuron projection development
  • DNA damage response, signal transduction resulting in induction of apoptosis
  • response to superoxide
  • positive regulation of defense response to virus by host
  • single strand break repair
  • DNA damage checkpoint
  • positive regulation of gene expression
  • response to UV-B

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • nuclear body
  • transcription elongation factor complex
  • nucleolus
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • ATPase activity
  • DNA binding
  • ATP binding
  • DNA helicase activity
  • DNA-dependent ATPase activity
  • protein binding
  • protein tyrosine kinase activator activity
  • sequence-specific DNA binding
  • chromatin binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.