XIST Gene Summary [Human]

X inactivation is an early developmental process in mammalian females that transcriptionally silences one of the pair of X chromosomes, thus providing dosage equivalence between males and females. The process is regulated by several factors, including a region of chromosome X called the X inactivation center (XIC). The XIC comprises several non-coding and protein-coding genes, and this gene was the first non-coding gene identified within the XIC. This gene is expressed exclusively from the XIC of the inactive X chromosome, and is essential for the initiation and spread of X-inactivation. The transcript is a spliced RNA. Alternatively spliced transcript variants have been identified, but their full length sequences have not been determined. Mutations in the XIST promoter cause familial skewed X inactivation. [provided by RefSeq, Apr 2012]

Details

Type
Long Non-Coding RNA
Official Symbol
XIST
Official Name
X inactive specific transcript [Source:HGNC Symbol;Acc:HGNC:12810]
Ensembl ID
ENSG00000229807
Bio databases IDs NCBI: 7503 Ensembl: ENSG00000229807
Aliases X inactive specific transcript, long intergenic non-protein coding RNA 1
Synonyms DXS1089, DXS399E, LINC00001, NCRNA00001, swd66, SXI1, X inactive specific transcript
Species
Human, Homo sapiens

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human XIST often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • protein binding activity, bridging
  • RNA binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
  • MACROH2A1
  • H4C3
  • histone H3
  • PRC2
  • miR-124-3p (and other miRNAs w/seed AAGGCAC)
disease
  • epithelial neoplasia
  • neoplasia
  • epithelial cancer
  • cancer
  • Alzheimer disease
  • diabetic nephropathy
  • metastasis
  • organismal death
  • pancreatic cancer
  • gastric epithelial cancer
regulates
role in cell
  • expression in
  • proliferation
  • migration
  • cell viability
  • apoptosis
  • invasion by
  • cell proliferation
  • autophagy in
  • glycolysis in
  • cell cycle progression in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • X chromosome

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human XIST gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • random inactivation of X chromosome
  • positive regulation of miRNA catabolic process

Cellular Component

Where in the cell the gene product is active
  • X chromosome
  • dosage compensation complex

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.