Jmjd6 Gene Summary [Mouse]

This gene encodes a nuclear protein with a JmjC domain. JmjC domain-containing proteins are predicted to function as protein hydroxylases or histone demethylases. This protein functions in differentiation of multiple tissues during development, and in anti-inflammatory cytokine signaling. It was first identified as a putative phosphatidylserine receptor involved in phagocytosis of apoptotic cells; however, subsequent studies have indicated that this protein does not directly function in the clearance of apoptotic cells, and questioned whether it is a true phosphatidylserine receptor. [provided by RefSeq, Jul 2008]

Details

Type
Retained Intron
Official Symbol
Jmjd6
Official Name
jumonji domain containing 6 [Source:MGI Symbol;Acc:MGI:1858910]
Ensembl ID
ENSMUSG00000056962
Bio databases IDs NCBI: 107817 Ensembl: ENSMUSG00000056962
Aliases jumonji domain containing 6
Synonyms 5730436I23Rik, D11Ertd195e, jumonji domain containing 6, jumonji domain containing 6, arginine demethylase and lysine hydroxylase, KIAA0585, mKIAA0585, PSR, Ps-R', PtdSerR, PTDSR, PTDSR1
Species
Mouse, Mus musculus
OrthologiesHumanRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in mouse Jmjd6 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • signaling receptor activity
  • 2-oxoglutarate:oxygen oxidoreductase
  • iron ion binding
  • enzyme
  • protein binding
  • single-stranded RNA binding
  • identical protein binding
  • RmlC-like cupin superfamily
  • Cupin-like domain
  • RNA binding
  • binding protein
  • demethylase activity
  • histone demethylase activity
  • transmembrane receptor

Pathways

Biological processes and signaling networks where the Jmjd6 gene in mouse plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • edema
  • epithelial cancer
  • neoplasia
  • metastasis
  • nasopharyngeal cancer
  • schizophrenia
  • growth failure
  • hypoplasia
  • early-onset preeclampsia
  • organismal death
regulated by
regulates
role in cell
  • expression in
  • activation in
  • binding
  • activation
  • quantity
  • proliferation
  • cell viability
  • differentiation
  • phosphorylation in
  • migration

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • Cytoplasm
  • cell surface
  • Plasma Membrane
  • cytosol
  • nucleoplasm
  • nucleoli

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the mouse Jmjd6 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • RNA splicing
  • T cell differentiation in thymus
  • retina development in camera-type eye
  • protein homooligomerization
  • sprouting angiogenesis
  • cell surface receptor signaling pathway
  • erythrocyte development
  • mRNA processing
  • positive regulation of transcription from RNA polymerase II promoter
  • recognition of apoptotic cell
  • macrophage activation
  • heart development
  • chromatin remodeling
  • positive regulation of transcription, DNA-dependent
  • kidney development
  • peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
  • regulation of nuclear mRNA splicing, via spliceosome
  • phagocytosis
  • negative regulation of protein homooligomerization
  • oxidative RNA demethylation
  • lung development

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • cytoplasm
  • cytosol
  • nucleolus
  • plasma membrane
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • histone demethylase activity (H4-R3 specific)
  • identical protein binding
  • protein binding
  • peptidyl-lysine 5-dioxygenase activity
  • RNA binding
  • iron ion binding
  • signaling receptor activity
  • single-stranded RNA binding
  • oxidative RNA demethylase activity
  • histone demethylase activity
  • histone demethylase activity (H3-R2 specific)

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.