Afdn Gene Summary [Mouse]

Enables cell adhesion molecule binding activity. Involved in several processes, including cell-cell adhesion mediated by cadherin; pore complex assembly; and regulation of postsynapse assembly. Acts upstream of or within several processes, including adherens junction maintenance; nervous system development; and regulation of oligodendrocyte progenitor proliferation. Located in several cellular components, including adherens junction; apical junction complex; and apical part of cell. Part of pore complex. Is active in hippocampal mossy fiber to CA3 synapse; postsynaptic density membrane; and presynaptic active zone membrane. Is expressed in several structures, including central nervous system; embryo ectoderm; eye; genitourinary system; and tail bud. Orthologous to human AFDN (afadin, adherens junction formation factor). [provided by Alliance of Genome Resources, Jul 2025]

Details

Type
Protein Coding
Official Symbol
Afdn
Official Name
afadin, adherens junction formation factor [Source:MGI Symbol;Acc:MGI:1314653]
Ensembl ID
ENSMUSG00000068036
Bio databases IDs NCBI: 17356 Ensembl: ENSMUSG00000068036
Aliases afadin, adherens junction formation factor
Synonyms 5033403D15, 5033403D15Rik, AF-6, AFADIN, Afadin-6, afadin, adherens junction formation factor, Gm314, I-afadin, l-afadin, LOC100505818, LOC730031, MLL-AF6, MLLT4, S-AFADIN
Species
Mouse, Mus musculus
OrthologiesHumanRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in mouse Afdn often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Arginine and glutamate-rich 1
  • Myosin v-like domain
  • UDM1_RNF168_RNF169-like
  • cell adhesion molecule binding
  • Forkhead associated domain
  • zDHHC ankyrin repeat binding domain
  • proline rich domain
  • forkhead associated (FHA) domain superfamily
  • Chromatin assembly factor 1 complex p150 subunit, N-terminal
  • Ras-binding domain
  • DIL domain
  • LIM-domain binding
  • Domain present in PSD-95, Dlg, and ZO-1/2
  • RA domain
  • enzyme binding
  • canonical PDZ domain
  • Cargo binding domain of myosin 5 and similar proteins
  • protein binding
  • PDZ domain
  • active-Ras binding domain
  • actin filament binding
  • MAP7 (E-MAP-115) family
  • FHA domain
  • Ubl1_cv_Nsp3_N-like
  • cpPDZ_Deg_HtrA-like
  • PDZ binding motif

Pathways

Biological processes and signaling networks where the Afdn gene in mouse plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • cancer
  • liver cancer
  • acute myeloid leukemia
  • COVID-19
  • liver cholangiocarcinoma
  • cholangiocarcinoma cancer
  • perihilar cholangiocarcinoma
  • survival
  • metastasis
regulated by
  • tretinoin
  • AGT
  • NPY
  • flutamide
  • cAMP-GEF
  • 6-[3-(1-adamantyl)-4-hydroxyphenyl]-3-chloro-2-naphthalenecarboxylic acid
  • HRAS
  • EPHB3
  • PTPN1
  • RAS
regulates
role in cell
  • phosphorylation in
  • expression in
  • differentiation
  • activation in
  • proliferation
  • morphology
  • cell-cell adhesion
  • migration
  • formation
  • assembly

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • mitochondrial fraction
  • glutaminergic synapse
  • spot-like adhesion site
  • cell junction
  • Cytoplasm
  • presynaptic regions
  • apical compartment
  • somatodendritic region
  • focal adhesions
  • Plasma Membrane
  • Mitochondria
  • intercellular junctions
  • cell-cell contacts
  • cytosol
  • endoplasmic reticulum buds
  • microsome
  • apical membrane
  • presynaptic membrane
  • postsynaptic membrane
  • synaptic membrane
  • nucleoplasm
  • nuclear speckles
  • synaptosomes
  • synapse
  • intercalated disks
  • cytoplasmic vesicles
  • anchoring junction
  • tight junctions
  • junctional complexes
  • axons
  • postsynaptic density
  • postsynaptic terminals
  • excitatory synapses
  • cell-cell adherens junctions

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the mouse Afdn gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • signal transduction
  • regulation of protein localization
  • cell-cell adhesion mediated by cadherin
  • positive regulation of gene expression
  • positive regulation of cell-cell adhesion
  • tight junction assembly
  • cell-cell signaling
  • pore complex assembly
  • cell adhesion
  • negative regulation of cell migration
  • positive regulation of cell-cell adhesion mediated by cadherin

Cellular Component

Where in the cell the gene product is active
  • cell-cell contact zone
  • adherens junction
  • occluding junction
  • cell-cell junction
  • nuclear speck
  • pore complex
  • cell junction
  • cytosol
  • plasma membrane
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • actin filament binding
  • protein binding
  • cadherin binding
  • cell adhesion molecule binding
  • small GTPase binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.