Lsm5 Gene Summary [Mouse]

Predicted to enable protein heterodimerization activity. Predicted to contribute to RNA binding activity. Acts upstream of or within response to bacterium. Predicted to be located in cytoplasm and nucleus. Predicted to be part of several cellular components, including Lsm1-7-Pat1 complex; Lsm2-8 complex; and spliceosomal snRNP complex. Is expressed in brain ventricular layer; cerebral cortex subventricular zone; foregut; and renal cortex. Orthologous to human LSM5 (LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated). [provided by Alliance of Genome Resources, Jul 2025]

Details

Type
Protein Coding
Official Symbol
Lsm5
Official Name
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:MGI Symbol;Acc:MGI:1913623]
Ensembl ID
ENSMUSG00000091625
Bio databases IDs NCBI: 66373 Ensembl: ENSMUSG00000091625
Aliases LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated
Synonyms 2010208O10Rik, 2310034K10Rik, LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, YER146W
Species
Mouse, Mus musculus
OrthologiesHumanRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in mouse Lsm5 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Sm and related proteins
  • protein binding
  • protein heterodimerization
  • RNA binding

Pathways

Biological processes and signaling networks where the Lsm5 gene in mouse plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
regulated by
role in cell
  • splicing by

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • Nucleus
  • cytosol
  • spliceosomes
  • nucleoplasm

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the mouse Lsm5 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • response to bacterium
  • mRNA processing
  • mRNA catabolic process
  • nuclear mRNA splicing, via spliceosome

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • cytoplasm
  • U4/U6 x U5 tri-snRNP complex
  • cytosol
  • U2-type precatalytic spliceosome
  • U6 snRNP
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • protein binding
  • RNA binding
  • protein heterodimerization activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.