Fendrr Gene Summary [Mouse]

This gene encodes a spliced long non-coding RNA transcribed from a bidirectional promoter shared with Foxf1 on the opposite strand. The encoded transcript is essential for normal development of the heart and body wall. It is thought to act by binding to polycomb repressive complex 2 (PRC2) and/or TrxG/MLL complexes to promote the methylation of the promoters of target genes, thus reducing their expression. It plays a role in cell fate determination in tissues derived from the lateral plate mesoderm. Knockout models reveal loss of this gene is lethal in mice. Alternatively spliced transcript variants have been identified. [provided by RefSeq, Dec 2014]

Details

Type
Long Non-Coding RNA
Official Symbol
Fendrr
Official Name
Foxf1 adjacent non-coding developmental regulatory RNA [Source:MGI Symbol;Acc:MGI:1916040]
Ensembl ID
ENSMUSG00000097336
Bio databases IDs NCBI: 68790 Ensembl: ENSMUSG00000097336
Aliases Foxf1 adjacent non-coding developmental regulatory RNA
Synonyms 1110050K14Rik, FOXF1 adjacent non-coding developmental regulatory RNA, FOXF1-AS1, lincFOXF1, linc-Foxf1a, LL66, LOC283904, LOC400550, onco-lncRNA-21, TCONS 00024240
Species
Mouse, Mus musculus
OrthologiesHuman

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in mouse Fendrr often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • double-stranded DNA binding
  • nucleic acid binding
  • sequence-specific DNA binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • gastric cancer
  • lung adenocarcinoma formation
  • open-angle glaucoma
  • colorectal cancer
  • Barrett syndrome
  • pulmonary hypertension
  • omphalocele
  • obesity
  • lung squamous cell carcinoma
  • squamous cell lung cancer
regulated by
role in cell
  • expression in
  • number
  • phosphorylation in
  • migration
  • invasion by
  • formation by
  • organization
  • ubiquitination in
  • epithelial-mesenchymal transition in
  • methylation in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Unknown

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.