RT1-Ha Gene Summary [Rat]

HLA-DPA1 belongs to the HLA class II alpha chain paralogues. This class II molecule is a heterodimer consisting of an alpha (DPA) and a beta (DPB) chain, both anchored in the membrane. It plays a central role in the immune system by presenting peptides derived from extracellular proteins. Class II molecules are expressed in antigen presenting cells (APC: B lymphocytes, dendritic cells, macrophages). The alpha chain is approximately 33-35 kDa and its gene contains 5 exons. Exon one encodes the leader peptide, exons 2 and 3 encode the two extracellular domains, exon 4 encodes the transmembrane domain and the cytoplasmic tail. Within the DP molecule both the alpha chain and the beta chain contain the polymorphisms specifying the peptide binding specificities, resulting in up to 4 different molecules. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
RT1-Ha
Official Name
RT1 class II, locus Ha [Source:RGD Symbol;Acc:1595921]
Ensembl ID
ENSRNOG00000026669
Bio databases IDs NCBI: 24986 Ensembl: ENSRNOG00000026669
Aliases RT1 class II, locus Ha
Synonyms DPA1, DP(W3), DP(W4), HLADP, HLA-DP1A, HLA-DPA, HLA-DPB1, HLASB, HLA-SB alpha chain, HLA-SB(DP) alpha, HLA-SB(DP) α, Hla-sb α, HLA-SB α chain, LOC100911800, major histocompatibility complex, class II, DP alpha 1, major histocompatibility complex, class II, DP α 1, PLT1, RT1 class II, locus Ha, RT1-Ha, RT1.Ha
Species
Rat, Rattus norvegicus
OrthologiesHuman

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Rt1-Ha often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Immunoglobulin C1-set domain
  • immunoglobulin domain
  • Class II histocompatibility antigen, alpha domain
  • protein binding
  • transmembrane receptor
  • peptide antigen binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • systemic sclerosis
  • diabetic nephropathy
  • sepsis
  • epithelial cancer
  • hypothyroidism
  • lung carcinoma process
  • osteoarthritis
  • COVID-19
  • allergy
  • Graves disease
regulated by
regulates
role in cell
  • proliferation
  • activation
  • response by

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • endocytic vesicle membrane
  • cytoplasmic vesicle membrane
  • intracellular membrane-bounded organelle
  • Cytoplasm
  • cell surface
  • cellular membrane
  • vesicles
  • Golgi membrane
  • trans Golgi network
  • lysosome membrane

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Rt1-Ha gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • positive regulation of T cell activation
  • immune response
  • peptide antigen assembly with MHC class II protein complex
  • positive regulation of interferon-gamma production
  • adaptive immune response
  • cellular response to interferon-gamma
  • positive regulation of T cell proliferation
  • antigen processing and presentation of exogenous peptide antigen via MHC class II
  • positive regulation of immune response

Cellular Component

Where in the cell the gene product is active
  • MHC class II protein complex
  • Golgi membrane
  • plasma membrane
  • lysosomal membrane
  • cell surface
  • late endosome membrane
  • transport vesicle membrane
  • clathrin-coated endocytic vesicle membrane
  • intracellular membrane-bounded organelle
  • ER to Golgi transport vesicle membrane
  • endocytic vesicle membrane
  • trans-Golgi network membrane

Molecular Function

What the gene product does at the molecular level
  • peptide antigen binding
  • MHC class II receptor activity
  • MHC class II protein complex binding

Gene-Specific Assays for Results You Can Trust

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