VCL Gene Summary [Human]

Vinculin is a cytoskeletal protein associated with cell-cell and cell-matrix junctions, where it is thought to function as one of several interacting proteins involved in anchoring F-actin to the membrane. Defects in VCL are the cause of cardiomyopathy dilated type 1W. Dilated cardiomyopathy is a disorder characterized by ventricular dilation and impaired systolic function, resulting in congestive heart failure and arrhythmia. Multiple alternatively spliced transcript variants have been found for this gene, but the biological validity of some variants has not been determined. [provided by RefSeq, Jul 2008]

Details

Type
Processed Transcript
Official Symbol
VCL
Official Name
vinculin [Source:HGNC Symbol;Acc:HGNC:12665]
Ensembl ID
ENSG00000035403
Bio databases IDs NCBI: 7414 Ensembl: ENSG00000035403
Aliases vinculin, metavinculin
Synonyms 9430097D22, CMD1W, CMH15, HEL114, MV, MVCL, Vcl predicted, VINC, Vinculin
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human VCL often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • ubiquitin protein ligase binding
  • alpha-catenin binding
  • beta-catenin binding
  • alpha helix
  • paxillin-binding domain
  • enzyme binding
  • protein binding
  • enzyme
  • head domain
  • proline rich domain
  • arginine-lysine rich domain
  • Vinculin family
  • actin binding
  • cadherin binding
  • tail domain
  • Hydrophobic hairpin domain

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • breast cancer
  • growth failure
  • COVID-19
  • primary dilated cardiomyopathy
  • prostate cancer
  • familial hypertrophic cardiomyopathy type 15
  • essential thrombocythemia
  • dilated cardiomyopathy
  • hypertrophic cardiomyopathy
  • atopic dermatitis
regulated by
regulates
role in cell
  • apoptosis
  • morphology
  • proliferation
  • activation in
  • expression in
  • phosphorylation in
  • migration
  • invasion by
  • growth
  • formation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • soluble fraction
  • detergent-insoluble fractions
  • detergent resistant lipid raft fraction
  • filopodia-like projection
  • secretory granule lumen
  • ficolin-1-rich granule lumen
  • cytoskeleton
  • Cytoplasm
  • cell-matrix contacts
  • cell surface
  • Extracellular Space
  • cell periphery
  • perinuclear region
  • cellular membrane
  • focal complexes
  • focal adhesions
  • podosomes
  • actin cytoskeleton
  • membrane skeleton
  • Nucleus
  • costameres
  • actin filaments
  • microtubule bundles
  • intercellular junctions
  • desmosomes
  • cell-cell contacts
  • cytoplasmic particles
  • cytosol
  • basal cell surfaces
  • terminal web
  • perinuclear space
  • pedicels
  • I band
  • intercalated disks
  • sarcolemma
  • Z line
  • transverse tubules
  • actin stress fibers
  • anchoring junction
  • zonula adherens
  • apical cell-cell contacts
  • membrane rafts
  • brush border
  • cellular protrusions
  • membrane processes
  • cell membrane leading edge
  • cell-cell adherens junctions
  • cell-matrix adherens junctions
  • plasma
  • lamellipodia
  • detergent-soluble fraction
  • force transduction layer
  • cytoskeletal fraction
  • cytoplasmic fraction
  • cytosolic fraction

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human VCL gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • cell-matrix adhesion
  • protein localization at cell surface
  • epithelial cell-cell adhesion
  • cell adhesion
  • regulation of focal adhesion assembly
  • axon extension
  • morphogenesis of an epithelium
  • apical junction assembly
  • lamellipodium assembly
  • adherens junction assembly
  • platelet aggregation
  • maintenance of blood-brain barrier
  • negative regulation of cell migration

Cellular Component

Where in the cell the gene product is active
  • specific granule lumen
  • costamere
  • extracellular region
  • cell projection
  • plasma membrane
  • cell-cell contact zone
  • adherens junction
  • cell-cell junction
  • cytoskeleton
  • extracellular vesicular exosome
  • focal adhesion
  • cytoplasm
  • fascia adherens
  • sarcolemma
  • cell-substrate junction
  • cytosol
  • secretory granule lumen
  • macromolecular complex

Molecular Function

What the gene product does at the molecular level
  • alpha-catenin binding
  • protein binding
  • ubiquitin protein ligase binding
  • actin binding
  • cadherin binding
  • structural molecule activity
  • dystroglycan binding
  • beta-catenin binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.