TARBP1 Gene Summary [Human]

HIV-1, the causative agent of acquired immunodeficiency syndrome (AIDS), contains an RNA genome that produces a chromosomally integrated DNA during the replicative cycle. Activation of HIV-1 gene expression by the transactivator Tat is dependent on an RNA regulatory element (TAR) located downstream of the transcription initiation site. This element forms a stable stem-loop structure and can be bound by either the protein encoded by this gene or by RNA polymerase II. This protein may act to disengage RNA polymerase II from TAR during transcriptional elongation. Alternatively spliced transcripts of this gene may exist, but their full-length natures have not been determined. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
TARBP1
Official Name
TAR (HIV-1) RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:11568]
Ensembl ID
ENSG00000059588
Bio databases IDs NCBI: 6894 Ensembl: ENSG00000059588
Aliases TAR (HIV-1) RNA binding protein 1, tRNA methyltransferase 3 homolog (S. cerevisiae)
Synonyms Gm17296, Gm179, TAR (HIV-1) RNA binding protein 1, TAR RNA binding protein 1, TRM3, TRMT3, tRNA guanosine 2 -O-methyltransferase TARBP1, TRP-185
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human TARBP1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • transcription regulator
  • tRNA (guanine) methyltransferase
  • SPOUT superfamily of SAM-dependent RNA methyltransferases
  • RNA binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • schizophrenia
regulates
  • DNA promoter
  • DNA endogenous promoter
  • RNA polymerase II

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human TARBP1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • tRNA methylation
  • regulation of transcription from RNA polymerase II promoter

Cellular Component

Where in the cell the gene product is active
  • nucleus

Molecular Function

What the gene product does at the molecular level
  • RNA binding
  • tRNA (guanine) methyltransferase activity

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