PRDM8 Gene Summary [Human]

This gene encodes a protein that belongs to a conserved family of histone methyltransferases that predominantly act as negative regulators of transcription. The encoded protein contains an N-terminal Su(var)3-9, Enhancer-of-zeste, and Trithorax (SET) domain and a double zinc-finger domain. Knockout of this gene in mouse results in mistargeting by neurons of the dorsal telencephalon, abnormal itch-like behavior, and impaired differentiation of rod bipolar cells. In humans, the protein has been shown to interact with the phosphatase laforin and the ubiquitin ligase malin, which regulate glycogen construction in the cytoplasm. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2016]

Details

Type
Processed Transcript
Official Symbol
PRDM8
Official Name
PR/SET domain 8 [Source:HGNC Symbol;Acc:HGNC:13993]
Ensembl ID
ENSG00000152784
Bio databases IDs NCBI: 56978 Ensembl: ENSG00000152784
Aliases PR/SET domain 8
Synonyms 4930565F05RIK, EPM10, KMT8D, LOC100045224, PFM5, PR domain containing 8, PR/SET domain 8
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human PRDM8 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Zinc finger, C2H2 type
  • histone lysine N-methyltransferase activity (H3-K9 specific)
  • zinc finger
  • transcription regulator
  • histone methyltransferase
  • SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
  • SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
  • transcription co-repressor
  • SET domain
  • chromatin binding
  • protein binding
  • C2H2-type zinc finger

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • pruritus
  • progressive myoclonic epilepsy type 10
regulated by
role in cell
  • expression in
  • targeting
  • mistargeting

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nucleoplasm
  • nuclear bodies

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human PRDM8 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • oligodendrocyte development
  • chromatin remodeling
  • negative regulation of transcription, DNA-dependent
  • corticospinal tract morphogenesis
  • regulation of transcription, DNA-dependent
  • corpus callosum morphogenesis
  • methylation

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • nuclear body
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • DNA binding
  • protein binding
  • transcription corepressor activity
  • metal ion binding
  • histone methyltransferase activity (H3-K9 specific)
  • chromatin binding

Gene-Specific Assays for Results You Can Trust

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