COL6A3

COL6A3 Gene Summary

This gene encodes the alpha-3 chain, one of the three alpha chains of type VI collagen, a beaded filament collagen found in most connective tissues. The alpha-3 chain of type VI collagen is much larger than the alpha-1 and -2 chains. This difference in size is largely due to an increase in the number of subdomains, similar to von Willebrand Factor type A domains, that are found in the amino terminal globular domain of all the alpha chains. These domains have been shown to bind extracellular matrix proteins, an interaction that explains the importance of this collagen in organizing matrix components. Mutations in the type VI collagen genes are associated with Bethlem myopathy, a rare autosomal dominant proximal myopathy with early childhood onset. Mutations in this gene are also a cause of Ullrich congenital muscular dystrophy, also referred to as Ullrich scleroatonic muscular dystrophy, an autosomal recessive congenital myopathy that is more severe than Bethlem myopathy. Multiple transcript variants have been identified, but the full-length nature of only some of these variants has been described. [provided by RefSeq, Jun 2009]

Details

Type
Retained Intron
Official Symbol
COL6A3
Official Name
collagen type VI alpha 3 chain [Source:HGNC Symbol;Acc:HGNC:2213]
Ensembl ID
ENSG00000163359
Bio databases IDs NCBI: 1293 Ensembl: ENSG00000163359
Aliases collagen type VI alpha 3 chain
Synonyms
alpha3 (VI) COLLAGEN,BTHLM1,BTHLM1C,Collagen type VI alpha 3,collagen, type VI, alpha 3,collagen type VI alpha 3 chain,Collagen type VI α 3,collagen, type VI, α 3,collagen type VI α 3 chain,DYT27,UCMD1,UCMD1C
Species
Human, Homo sapiens

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • extracellular matrix structural constituent conferring tensile strength
  • NC1 domain
  • Kunitz/Bovine pancreatic trypsin inhibitor (BPTI) domain
  • von Willebrand factor (vWF) type A domain
  • globular domain
  • C5 domain
  • von Willebrand factor type A domain
  • n-terminal subdomain
  • triple helical domain
  • noncollagenous domain
  • FN3
  • vWFA
  • Collagen triple helix repeat (20 copies)
  • c-terminal subdomain
  • Histone H1-like nucleoprotein HC2

Pathways

Biological processes and signaling networks where the COL6A3 gene plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
  • DYSF
  • SOX2
  • METTL14
  • GRN
  • collagenase
  • KLHL4
  • HSP90AA1
  • COL6A2
  • COL6A1
  • NEK4
disease
  • hepatocellular carcinoma
  • breast carcinoma
  • lung squamous cell carcinoma
  • renal clear cell adenocarcinoma
  • thyroid carcinoma
  • hypertension
  • urothelial bladder carcinoma
  • cutaneous melanoma
  • bladder cancer
  • head and neck squamous cell carcinoma
regulated by
  • sirolimus
  • FAS
  • tretinoin
  • IL13
  • FKBP10
  • MYC
  • ERBB2
  • SMAD7
  • TGFB1
  • S1PR4
regulates
  • COL1A1
  • TGF beta
  • alpha SMA
  • WWC1
  • TIMP1
role in cell
  • expression in
  • growth
  • apoptosis
  • formation
  • quantity
  • proliferation
  • contact growth inhibition
  • communication

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Extracellular Space
  • cell-associated matrix
  • myofilaments
  • lipid droplets
  • endoplasmic reticulum lumen
  • nuclear scaffolds
  • sarcolemma
  • extracellular matrix
  • plasma

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the COL6A3 gene, providing context for its role in the cell.

BIOLOGICAL PROCESS

Functions and activities the gene product is involved in
  • muscle organ development
  • response to glucose stimulus
  • protein kinase B signaling cascade
  • response to UV
  • cell adhesion
  • neuron apoptotic process

CELLULAR COMPONENT

Where in the cell the gene product is active
  • endoplasmic reticulum lumen
  • extracellular space
  • extracellular vesicular exosome
  • sarcolemma
  • extracellular matrix
  • extracellular region
  • collagen type VI

MOLECULAR FUNCTION

What the gene product does at the molecular level
  • serine-type endopeptidase inhibitor activity
  • extracellular matrix structural constituent conferring tensile strength

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.