RAG2

RAG2 Gene Summary

This gene encodes a protein that is involved in the initiation of V(D)J recombination during B and T cell development. This protein forms a complex with the product of the adjacent recombination activating gene 1, and this complex can form double-strand breaks by cleaving DNA at conserved recombination signal sequences. The recombination activating gene 1 component is thought to contain most of the catalytic activity, while the N-terminal of the recombination activating gene 2 component is thought to form a six-bladed propeller in the active core that serves as a binding scaffold for the tight association of the complex with DNA. A C-terminal plant homeodomain finger-like motif in this protein is necessary for interactions with chromatin components, specifically with histone H3 that is trimethylated at lysine 4. Mutations in this gene cause Omenn syndrome, a form of severe combined immunodeficiency associated with autoimmune-like symptoms. [provided by RefSeq, Jul 2008]

Details

Type
Processed Transcript
Official Symbol
RAG2
Official Name
recombination activating 2 [Source:HGNC Symbol;Acc:HGNC:9832]
Ensembl ID
ENSG00000175097
Bio databases IDs NCBI: 5897 Ensembl: ENSG00000175097
Aliases recombination activating 2
Synonyms
recombination activating 2,recombination activating gene 2
Species
Human, Homo sapiens

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • histone binding
  • Recombination activating protein 2
  • protein binding activity, bridging
  • chromatin binding
  • enzyme
  • protein binding
  • core domain, functional
  • phosphatidylinositol binding
  • binding protein
  • zinc ion binding
  • phosphatidylinositol-3,4,5-triphosphate binding
  • phosphatidylinositol-4,5-bisphosphate binding
  • PHD finger superfamily

Pathways

Biological processes and signaling networks where the RAG2 gene plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
  • RAG1
  • MYB
  • LEF1
  • PAX5
  • SKP2
  • FOXP1
  • GATA3
  • NFATC1
  • KPNA1
  • SMAD3
disease
  • neoplasia
  • cancer
  • epithelial cancer
  • diarrhea
  • infection
  • colitis
  • breast cancer
  • bleeding
  • bacteremia
  • dextran sodium sulfate-induced colitis
regulated by
  • lipopolysaccharide
  • Cdkn2a
  • GFI1B
  • CD40
  • MYB
  • EBF1
  • BCR (complex)
  • HRAS
  • NFATC2
  • ionomycin
regulates
  • cholesterol
  • GPR183
  • nitric oxide
  • IFNG
  • IL2
  • BAX
  • TNF
  • IL12 (family)
  • IL1B
  • IL6
role in cell
  • cell death
  • differentiation
  • expression in
  • proliferation
  • apoptosis
  • number
  • binding in
  • production in
  • quantity
  • segregation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • Cytoplasm
  • nucleoplasm

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the RAG2 gene, providing context for its role in the cell.

BIOLOGICAL PROCESS

Functions and activities the gene product is involved in
  • V(D)J recombination
  • negative regulation of T cell differentiation in thymus
  • organ growth
  • B cell differentiation
  • T cell differentiation in thymus
  • positive regulation of organ growth
  • T cell lineage commitment
  • chromatin organization
  • defense response to bacterium
  • pre-B cell allelic exclusion
  • mature B cell differentiation involved in immune response
  • B cell homeostatic proliferation
  • B cell lineage commitment

CELLULAR COMPONENT

Where in the cell the gene product is active
  • nucleoplasm

MOLECULAR FUNCTION

What the gene product does at the molecular level
  • phosphatidylinositol-3,4,5-trisphosphate binding
  • phosphatidylinositol-4,5-bisphosphate binding
  • zinc ion binding
  • methylated histone residue binding
  • phosphatidylinositol binding
  • phosphatidylinositol-3,5-bisphosphate binding
  • sequence-specific DNA binding
  • chromatin binding
  • phosphatidylinositol-3,4-bisphosphate binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.