PAX5 Gene Summary [Human]

This gene encodes a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA-binding motif, known as the paired box. Paired box transcription factors are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation. This gene encodes the B-cell lineage specific activator protein that is expressed at early, but not late stages of B-cell differentiation. Its expression has also been detected in developing CNS and testis and so the encoded protein may also play a role in neural development and spermatogenesis. This gene is located at 9p13, which is involved in t(9;14)(p13;q32) translocations recurring in small lymphocytic lymphomas of the plasmacytoid subtype, and in derived large-cell lymphomas. This translocation brings the potent E-mu enhancer of the IgH gene into close proximity of the PAX5 promoter, suggesting that the deregulation of transcription of this gene contributes to the pathogenesis of these lymphomas. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2013]

Details

Type
Protein Coding
Official Symbol
PAX5
Official Name
paired box 5 [Source:HGNC Symbol;Acc:HGNC:8619]
Ensembl ID
ENSG00000196092
Bio databases IDs NCBI: 5079 Ensembl: ENSG00000196092
Aliases paired box 5, B-cell lineage specific activator
Synonyms ALL3, B-cell lineage specific activator, BSAP, EBB-1, KLP, paired box 5, RGD1565236
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human PAX5 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • RNA polymerase II transcription regulatory region sequence-specific binding transcriptional activator activity
  • transcription regulator
  • DNA binding domain
  • nucleic acid binding
  • Groucho binding domain
  • nuclear localization sequence
  • HTH_ARSR
  • octapeptide domain
  • transcription activation domain
  • inhibitory domain
  • protein binding
  • sequence-specific DNA binding
  • HTH_CRP
  • Paired-box protein 2 C terminal
  • DNA binding
  • RNA polymerase II transcription factor activity, sequence-specific DNA binding
  • double-stranded DNA binding
  • 'Paired box' domain
  • transcription factor activity
  • Paired Box domain

Pathways

Biological processes and signaling networks where the PAX5 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • non-small cell lung cancer
  • anxiety disorder
  • coronary artery disease
  • non-small cell lung carcinoma
  • PAX5-associated susceptibility to leukemia
  • insomnia
  • precursor B-cell acute lymphoblastic leukemia
  • susceptibility to acute lymphoblastic leukemia type 3
  • metabolic syndrome X
regulated by
role in cell
  • growth
  • proliferation
  • cell death
  • upregulation in
  • expression in
  • induction
  • activation
  • activation in
  • loss
  • binding in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • nucleoplasm
  • chromatin

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human PAX5 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • B cell differentiation
  • spermatogenesis
  • anatomical structure development
  • embryonic cranial skeleton morphogenesis
  • transcription from RNA polymerase II promoter
  • cerebral cortex development
  • positive regulation of transcription from RNA polymerase II promoter
  • regulation of transcription from RNA polymerase II promoter
  • negative regulation of transcription from RNA polymerase II promoter
  • lateral ventricle development
  • skeletal muscle cell differentiation
  • adult behavior

Cellular Component

Where in the cell the gene product is active
  • chromatin
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • protein binding
  • RNA polymerase II core promoter proximal region sequence-specific DNA binding
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
  • sequence-specific DNA binding RNA polymerase II transcription factor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.