TRAF6 Gene Summary [Human]

The protein encoded by this gene is a member of the TNF receptor associated factor (TRAF) protein family. TRAF proteins are associated with, and mediate signal transduction from, members of the TNF receptor superfamily. This protein has an amino terminal RING domain which is followed by four zinc-finger motifs, a central coiled-coil region and a highly conserved carboxyl terminal domain, known as the TRAF-C domain and mediates signaling from members of the TNF receptor superfamily as well as the Toll/IL-1 family. Signals from receptors such as CD40, TNFSF11/RANCE and IL-1 have been shown to be mediated by this protein. This protein also interacts with various protein kinases including IRAK1/IRAK, SRC and PKCzeta, which provides a link between distinct signaling pathways. This protein functions as a signal transducer in the NF-kappaB pathway that activates IkappaB kinase (IKK) in response to proinflammatory cytokines. The interaction of this protein with UBE2N/UBC13, and UBE2V1/UEV1A, which are ubiquitin conjugating enzymes catalyzing the formation of polyubiquitin chains, has been found to be required for IKK activation by this protein. This protein also interacts with the transforming growth factor (TGF) beta receptor complex and is required for Smad-independent activation of the JNK and p38 kinases. The protein encoded by this gene is a key molecule in antiviral innate and antigen-specific immune responses. [provided by RefSeq, Nov 2021]

Details

Type
Protein Coding
Official Symbol
TRAF6
Official Name
TNF receptor associated factor 6 [Source:HGNC Symbol;Acc:HGNC:12036]
Ensembl ID
ENSG00000175104
Bio databases IDs NCBI: 7189 Ensembl: ENSG00000175104
Aliases TNF receptor associated factor 6, RING finger protein 85
Synonyms 2310003F17Rik, C630032O20Rik, LOC100042930, LOC100048242, MGC:3310, RNF85, TNF receptor-associated factor 6
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human TRAF6 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • protein binding activity, bridging
  • coiled-coil domain
  • enzyme
  • identical protein binding
  • TRAF-type zinc finger
  • Ring finger
  • RING finger (Really Interesting New Gene) domain and U-box domain superfamily
  • TRAF-like zinc-finger
  • CART domain
  • protein kinase binding
  • MATH
  • zinc finger of C3HC4-type, RING
  • ubiquitin protein ligase activity
  • TRAF-N subdomain
  • enzyme binding
  • histone deacetylase binding
  • Ring finger domain
  • protein binding
  • TRAF domain
  • TNF receptor-associated factor 6 zinc finger 2
  • RING-type zinc-finger
  • Modified RING finger domain
  • ubiquitin-protein transferase activity
  • zinc finger domain
  • TRAF-C subdomain
  • Zinc finger, C3HC4 type (RING finger)

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • fibrosis
  • glioma formation
  • glioma
  • dextran sodium sulfate-induced colitis
  • lipopolysaccharide-induced lung injury
  • osteopetrosis
  • Churg-Strauss syndrome
  • exencephaly
  • neurological deficiency
regulated by
regulates
role in cell
  • expression in
  • proliferation
  • phosphorylation in
  • activation in
  • tyrosine phosphorylation in
  • number
  • migration
  • production in
  • cell death
  • apoptosis

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • soluble fraction
  • membrane fraction
  • glutaminergic synapse
  • perinuclear region
  • postsynaptic region
  • cellular membrane
  • Nucleus
  • Plasma Membrane
  • lipid droplets
  • cytosol
  • cytoplasmic face of plasma membrane
  • endosomal membrane
  • nucleoplasm
  • nuclear envelope
  • cytoplasmic fraction
  • cytosolic fraction

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human TRAF6 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • positive regulation of JUN kinase activity
  • positive regulation of sequence-specific DNA binding transcription factor activity
  • positive regulation of NF-kappaB transcription factor activity
  • cytoplasmic pattern recognition receptor signaling pathway
  • MyD88-dependent toll-like receptor signaling pathway
  • positive regulation of transcription regulatory region DNA binding
  • negative regulation of transcription, DNA-dependent
  • in utero embryonic development
  • bone resorption
  • ossification
  • regulation of immunoglobulin production
  • positive regulation of protein ubiquitination
  • antigen processing and presentation of exogenous peptide antigen via MHC class II
  • positive regulation of type I interferon production
  • toll-like receptor 4 signaling pathway
  • NIK/NF-kappaB cascade
  • regulation of apoptotic process
  • positive regulation of T cell proliferation
  • response to DNA damage stimulus
  • tumor necrosis factor-mediated signaling pathway
  • positive regulation of T cell cytokine production
  • response to interleukin-1
  • toll-like receptor 3 signaling pathway
  • lipopolysaccharide-mediated signaling pathway
  • positive regulation of interleukin-6 production
  • positive regulation of lipopolysaccharide-mediated signaling pathway
  • TRIF-dependent toll-like receptor signaling pathway
  • Fc-epsilon receptor signaling pathway
  • positive regulation of I-kappaB kinase/NF-kappaB cascade
  • regulation of I-kappaB kinase/NF-kappaB cascade
  • odontogenesis of dentin-containing tooth
  • positive regulation of transcription from RNA polymerase II promoter
  • stimulatory C-type lectin receptor signaling pathway
  • autophagic vacuole assembly
  • negative regulation of transcription from RNA polymerase II promoter
  • positive regulation of osteoclast differentiation
  • neural tube closure
  • myeloid dendritic cell differentiation
  • activation of protein kinase activity
  • T cell receptor signaling pathway
  • positive regulation of interleukin-2 production
  • protein autoubiquitination
  • protein polyubiquitination
  • T-helper 1 type immune response
  • I-kappaB kinase/NF-kappaB cascade
  • osteoclast differentiation
  • positive regulation of interleukin-12 production
  • cellular response to lipopolysaccharide
  • innate immune response
  • protein K63-linked ubiquitination
  • cellular response to cytokine stimulus
  • interleukin-1-mediated signaling pathway

Cellular Component

Where in the cell the gene product is active
  • plasma membrane
  • internal side of plasma membrane
  • lipid particle
  • nucleus
  • perinuclear region of cytoplasm
  • cytoplasm
  • cell cortex
  • cytosol
  • extrinsic to internal side of plasma membrane
  • endosome membrane
  • macromolecular complex
  • CD40 receptor complex

Molecular Function

What the gene product does at the molecular level
  • ubiquitin-protein ligase activity
  • identical protein binding
  • zinc ion binding
  • ubiquitin conjugating enzyme binding
  • protein binding
  • histone deacetylase binding
  • ubiquitin-ubiquitin ligase activity
  • tumor necrosis factor receptor binding
  • protein kinase B binding

Gene-Specific Assays for Results You Can Trust

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