EHMT1 Gene Summary [Human]

The protein encoded by this gene is a histone methyltransferase that methylates the lysine-9 position of histone H3. This action marks the genomic region packaged with these methylated histones for transcriptional repression. This protein may be involved in the silencing of MYC- and E2F-responsive genes and therefore could play a role in the G0/G1 cell cycle transition. Defects in this gene are a cause of chromosome 9q subtelomeric deletion syndrome (9q-syndrome, also known as Kleefstra syndrome). Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2017]

Details

Type
Protein Coding
Official Symbol
EHMT1
Official Name
euchromatic histone lysine methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24650]
Ensembl ID
ENSG00000181090
Bio databases IDs NCBI: 79813 Ensembl: ENSG00000181090
Aliases euchromatic histone lysine methyltransferase 1
Synonyms 9230102N17Rik, D330003E03, EHMT1-IT1, EMT1, euchromatic histone lysine methyltransferase 1, euchromatic histone methyltransferase 1, EUHMTASE1, FP13812, GLP, GLP1, KLEFS1, KMT1D, LOC100909589, LOC103691745, mKIAA1876
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human EHMT1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Ankyrin repeats (many copies)
  • SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
  • Ankyrin repeats (3 copies)
  • transcription factor binding
  • protein domain specific binding
  • enzyme
  • protein binding
  • p53 binding
  • Ankyrin repeat
  • protein-lysine N-methyltransferase
  • histone lysine N-methyltransferase activity (H3-K9 specific)
  • methyltransferase
  • Pre-SET motif
  • histone-lysine N-methyltransferase
  • histone lysine N-methyltransferase activity (H3-K27 specific)
  • RING finger (Really Interesting New Gene) domain and U-box domain superfamily
  • SET domain
  • SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
  • ankyrin repeats
  • N-terminal to some SET domains

Pathways

Biological processes and signaling networks where the EHMT1 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • COVID-19
  • atopic dermatitis
  • plasma cell myeloma
  • asthma
  • chromosome 9q subtelomeric deletion syndrome
  • marfanoid habitus with mental retardation
  • celiac disease
  • hereditary disorder
  • mental retardation
  • head and neck cancer
regulated by
regulates
role in cell
  • migration
  • expression in
  • apoptosis
  • proliferation
  • cell death
  • upregulation in
  • cell viability
  • binding in
  • organization
  • abnormal morphology

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nucleoplasm
  • nuclear bodies

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human EHMT1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • negative regulation of transcription from RNA polymerase II promoter
  • response to fungicide
  • negative regulation of transcription, DNA-dependent
  • regulation of embryonic development
  • peptidyl-lysine monomethylation
  • chromatin organization
  • peptidyl-lysine dimethylation
  • methylation-dependent chromatin silencing

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • nuclear body
  • chromatin
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • transcription corepressor binding
  • p53 binding
  • zinc ion binding
  • protein binding
  • C2H2 zinc finger domain binding
  • histone methyltransferase activity (H3-K9 specific)
  • methyltransferase activity
  • protein-lysine N-methyltransferase activity
  • histone methyltransferase activity (H3-K27 specific)

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.