VPS33B Gene Summary [Human]

Vesicle mediated protein sorting plays an important role in segregation of intracellular molecules into distinct organelles. Genetic studies in yeast have identified more than 40 vacuolar protein sorting (VPS) genes involved in vesicle transport to vacuoles. This gene is a member of the Sec-1 domain family, and encodes the human ortholog of rat Vps33b which is homologous to the yeast class C Vps33 protein. The mammalian class C vacuolar protein sorting proteins are predominantly associated with late endosomes/lysosomes, and like their yeast counterparts, may mediate vesicle trafficking steps in the endosome/lysosome pathway. Mutations in this gene are associated with arthrogryposis-renal dysfunction-cholestasis syndrome. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2014]

Details

Type
Protein Coding
Official Symbol
VPS33B
Official Name
VPS33B late endosome and lysosome associated [Source:HGNC Symbol;Acc:HGNC:12712]
Ensembl ID
ENSG00000184056
Bio databases IDs NCBI: 26276 Ensembl: ENSG00000184056
Aliases VPS33B late endosome and lysosome associated
Synonyms KDIDAR, PFIC12, vacuolar protein sorting 33B, VPS33B late endosome and lysosome associated, VPS33B, late endosome and lysosome associated
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human VPS33B often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • binding protein
  • protein binding
  • Sec1 family
  • transporter

Pathways

Biological processes and signaling networks where the VPS33B gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • arthrogryposis, renal dysfunction, and cholestasis type 1
  • arthrogryposis, renal dysfunction, cholestasis
  • hereditary disorder
  • preeclampsia
  • restless legs syndrome
  • pain
  • non-insulin-dependent diabetes mellitus
  • keratoderma-ichthyosis-deafness syndrome
  • metabolic syndrome X
  • progressive familial intrahepatic cholestasis type 12
regulated by
  • 2,4,5,2',4',5'-hexachlorobiphenyl
  • PAGA
  • YAP1
regulates
role in cell
  • proliferation
  • growth
  • fusion
  • quantity
  • secretion
  • localization
  • differentiation
  • organization
  • aggregation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • perinuclear region
  • cellular membrane
  • endosomes
  • lysosome
  • Golgi Apparatus
  • cytosol
  • lysosome membrane
  • endosomal membrane
  • alpha granules
  • synaptic vesicles
  • late endosomes
  • clathrin-coated vesicles

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human VPS33B gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • membrane fusion
  • endosome organization
  • intracellular transport
  • protein transport
  • regulation of platelet aggregation
  • phagosome-lysosome fusion
  • endosome to lysosome transport
  • intracellular protein transport
  • skin morphogenesis
  • lysosome localization
  • vesicle-mediated transport
  • peptidyl-lysine hydroxylation
  • megakaryocyte development
  • melanosome localization
  • collagen fibril organization
  • platelet alpha granule organization
  • collagen metabolic process

Cellular Component

Where in the cell the gene product is active
  • platelet alpha granule
  • CORVET complex
  • late endosome
  • Golgi apparatus
  • lysosomal membrane
  • lysosome
  • early endosome membrane
  • late endosome membrane
  • perinuclear region of cytoplasm
  • endosome
  • cytoplasm
  • cytosol
  • endosome membrane
  • recycling endosome
  • clathrin-coated vesicle
  • HOPS complex

Molecular Function

What the gene product does at the molecular level
  • protein binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.