Kdm5b Gene Summary [Mouse]

This gene encodes a lysine-specific histone demethylase that belongs to the jumonji/ARID domain-containing family of histone demethylases. The encoded protein is capable of demethylating tri-, di- and monomethylated lysine 4 of histone H3. This protein plays a role in the transcriptional repression or certain tumor suppressor genes and is upregulated in certain cancer cells. This protein may also play a role in genome stability and DNA repair. Homozygous mutant mice display decreased body weight, decreased female fertility, lower uterine weight, and a delay in mammary development. Knockout of this gene has also been associated with embryonic lethality. [provided by RefSeq, Dec 2016]

Details

Type
Protein Coding
Official Symbol
Kdm5b
Official Name
lysine (K)-specific demethylase 5B [Source:MGI Symbol;Acc:MGI:1922855]
Ensembl ID
ENSMUSG00000042207
Bio databases IDs NCBI: 75605 Ensembl: ENSMUSG00000042207
Aliases lysine (K)-specific demethylase 5B
Synonyms 2010009J12Rik, 2210016I17Rik, CT31, D1Ertd202e, JARID1B, lysine demethylase 5B, mKIAA4034, MRT65, PLU-1, PPP1R98, PUT1, Rb-Bp2, RBBP2H1A, RBP2-H1, RGD1565602
Species
Mouse, Mus musculus
OrthologiesHumanRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in mouse Kdm5b often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • histone binding
  • PHD zinc finger
  • jmjN domain
  • nucleic acid binding
  • PLU-1-like protein
  • 2-oxoglutarate:oxygen oxidoreductase
  • transcription co-repressor
  • enzyme
  • protein binding
  • sequence-specific DNA binding
  • ARID/BRIGHT DNA binding domain
  • RmlC-like cupin superfamily
  • DNA binding
  • C5HC2 zinc finger
  • zinc ion binding
  • double-stranded DNA binding
  • PHD finger superfamily
  • histone demethylase activity
  • ARID/BRIGHT DNA binding domain family

Pathways

Biological processes and signaling networks where the Kdm5b gene in mouse plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • breast cancer
  • pervasive developmental disorder
  • autosomal recessive mental retardation type 65
  • hereditary disorder
  • acute myeloid leukemia
  • neurodevelopmental disorder
  • papillary thyroid carcinoma
  • papillary thyroid cancer
  • mental retardation
regulated by
regulates
role in cell
  • proliferation
  • expression in
  • binding in
  • growth
  • mitosis
  • colony formation by
  • number
  • accumulation
  • migration
  • invasion by

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • cytosol
  • nucleoplasm

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the mouse Kdm5b gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • response to fungicide
  • post-embryonic development
  • cellular response to fibroblast growth factor stimulus
  • regulation of transcription, DNA-dependent
  • branching involved in mammary gland duct morphogenesis
  • mammary duct terminal end bud growth
  • uterus morphogenesis
  • single fertilization
  • chromatin remodeling
  • negative regulation of transcription, DNA-dependent
  • rhythmic process
  • positive regulation of gene expression
  • regulation of estradiol secretion
  • lens fiber cell differentiation
  • positive regulation of mammary gland epithelial cell proliferation

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • cytosol
  • chromatin
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • nucleic acid binding
  • DNA binding
  • zinc ion binding
  • protein binding
  • transcription corepressor activity
  • histone binding
  • histone demethylase activity
  • histone demethylase activity (H3-K4 specific)
  • histone demethylase activity (H3-trimethyl-K4 specific)

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.