Sox2 Gene Summary [Rat]

This intronless gene encodes a member of the SRY-related HMG-box (SOX) family of transcription factors involved in the regulation of embryonic development and in the determination of cell fate. The product of this gene is required for stem-cell maintenance in the central nervous system, and also regulates gene expression in the stomach. Mutations in this gene have been associated with optic nerve hypoplasia and with syndromic microphthalmia, a severe form of structural eye malformation. This gene lies within an intron of another gene called SOX2 overlapping transcript (SOX2OT). [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
Sox2
Official Name
SRY-box transcription factor 2 [Source:RGD Symbol;Acc:1565646]
Ensembl ID
ENSRNOG00000012199
Bio databases IDs NCBI: 499593 Ensembl: ENSRNOG00000012199
Aliases SRY-box transcription factor 2
Synonyms ANOP3, lcc, LOC100912162, MCOPS3, RGD1565646, Sry-2, SRY-box transcription factor 2, SRY (sex determining region Y)-box 2, ysb
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Sox2 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • RNA polymerase II transcription regulatory region sequence-specific binding transcriptional activator activity
  • transcription regulator
  • DNA binding domain
  • nucleic acid binding
  • high mobility group (HMG)-box domain superfamily
  • SOX transcription factor
  • nuclear localization sequence
  • transcription activation domain
  • enzyme binding
  • transcription factor binding
  • chromatin binding
  • protein binding
  • sequence-specific DNA binding
  • HMG2 like domain
  • DNA binding
  • RNA binding
  • RNA polymerase II transcription factor activity, sequence-specific DNA binding
  • serine-rich region
  • double-stranded DNA binding
  • HMG (high mobility group) box
  • HMG-box domain
  • high mobility group
  • transcription factor activity

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • diabetic nephropathy
  • tumorigenesis
  • neoplasia
  • lung adenocarcinoma
  • non-small cell lung cancer
  • epithelial cancer
  • epithelial neoplasia
  • cancer
  • non-small cell lung carcinoma
  • breast cancer
regulated by
role in cell
  • survival
  • expression in
  • proliferation
  • apoptosis
  • number
  • degradation in
  • phosphorylation in
  • activation in
  • formation in
  • migration

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • Cytoplasm
  • cytosol
  • nucleoplasm
  • chromatin
  • perikaryon

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Sox2 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • response to growth factor stimulus
  • inner ear development
  • positive regulation of cell-cell adhesion
  • negative regulation of neuron differentiation
  • response to wounding
  • chromatin organization
  • positive regulation of transcription from RNA polymerase II promoter
  • neuronal stem cell maintenance
  • negative regulation of transcription from RNA polymerase II promoter
  • glial cell fate commitment
  • forebrain development
  • positive regulation of transcription, DNA-dependent
  • osteoblast differentiation
  • somatic stem cell maintenance
  • neuron differentiation
  • adenohypophysis development
  • regulation of transcription, DNA-dependent
  • positive regulation of cell differentiation
  • brain development
  • positive regulation of MAPK cascade
  • tissue regeneration
  • pituitary gland development
  • negative regulation of canonical Wnt receptor signaling pathway
  • eye development
  • regulation of cysteine-type endopeptidase activity involved in apoptotic process
  • negative regulation of epithelial cell proliferation
  • endodermal cell fate specification
  • regulation of gene expression

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • transcription factor complex
  • cytoplasm
  • nuclear speck
  • cytosol
  • chromatin
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • miRNA binding
  • DNA binding
  • sequence-specific DNA binding transcription factor activity
  • protein binding
  • RNA polymerase II core promoter proximal region sequence-specific DNA binding
  • transcription regulatory region sequence-specific DNA binding
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
  • sequence-specific DNA binding
  • sequence-specific DNA binding RNA polymerase II transcription factor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.