Taf9 Gene Summary [Rat]

Initiation of transcription by RNA polymerase II requires the activities of more than 70 polypeptides. The protein that coordinates these activities is transcription factor IID (TFIID), which binds to the core promoter to position the polymerase properly, serves as the scaffold for assembly of the remainder of the transcription complex, and acts as a channel for regulatory signals. TFIID is composed of the TATA-binding protein (TBP) and a group of evolutionarily conserved proteins known as TBP-associated factors or TAFs. TAFs may participate in basal transcription, serve as coactivators, function in promoter recognition or modify general transcription factors (GTFs) to facilitate complex assembly and transcription initiation. This gene encodes one of the smaller subunits of TFIID that binds to the basal transcription factor GTF2B as well as to several transcriptional activators such as p53 and VP16. In human, TAF9 and AK6 (GeneID: 102157402) are two distinct genes that share 5' exons. A similar but distinct gene (TAF9L) has been found on the X chromosome and a pseudogene has been identified on chromosome 19. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2013]

Details

Type
Protein Coding
Official Symbol
Taf9
Official Name
TATA-box binding protein associated factor 9 [Source:RGD Symbol;Acc:727861]
Ensembl ID
ENSRNOG00000051258
Bio databases IDs NCBI: 373541 Ensembl: ENSRNOG00000051258
Aliases TATA-box binding protein associated factor 9
Synonyms 2310012M09Rik, 4921516M08RIK, CINAP, MGC:5067, STAF31/32, TAF2G, TAFII-31, TAFII-32, TAFIID32, TATA-box binding protein associated factor 9
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Taf9 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • histone-fold domain
  • Transcription initiation factor IID, 31kD subunit
  • CENP-S protein
  • transcription regulator
  • histone acetyltransferase
  • transcription co-activator
  • nucleic acid binding
  • transcription factor binding
  • protein domain specific binding
  • p53 binding
  • protein binding
  • CR domain
  • sequence-specific DNA binding
  • DNA binding
  • histone fold domain (HFD) superfamily
  • ATPase binding
  • double-stranded DNA binding
  • tail domain
  • p53-binding domain
  • Bromodomain associated

Pathways

Biological processes and signaling networks where the Taf9 gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • peripheral arterial disease
  • chronic kidney disease
  • nonalcoholic fatty liver disease
regulated by
regulates
  • CXCL8
  • TP53
  • DNA promoter
  • DNA endogenous promoter
  • synthetic promoter
  • reporter gene
  • RNA polymerase II
  • HAMP
role in cell
  • apoptosis
  • cytostasis

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • Cytoplasm
  • nucleoplasm

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Taf9 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • mRNA transcription from RNA polymerase II promoter
  • positive regulation of response to cytokine stimulus
  • positive regulation of transcription initiation from RNA polymerase II promoter
  • regulation of DNA repair
  • regulation of transcription, DNA-dependent
  • response to DNA damage stimulus
  • positive regulation of transcription from RNA polymerase II promoter
  • regulation of transcription from RNA polymerase II promoter
  • chromatin remodeling
  • RNA polymerase II transcriptional preinitiation complex assembly
  • box C/D snoRNP assembly
  • positive regulation of transcription, DNA-dependent
  • regulation of RNA splicing
  • negative regulation of apoptotic process
  • response to interleukin-1
  • protein stabilization
  • negative regulation of proteasomal ubiquitin-dependent protein catabolic process

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • transcription factor TFIID complex
  • transcription factor TFTC complex
  • pre-snoRNP complex
  • SAGA complex
  • nucleoplasm
  • MLL1 complex

Molecular Function

What the gene product does at the molecular level
  • DNA binding
  • histone acetyltransferase activity
  • p53 binding
  • protein binding
  • transcription coactivator activity
  • protein heterodimerization activity
  • general RNA polymerase II transcription factor activity
  • C2H2 zinc finger domain binding
  • transcription regulatory region sequence-specific DNA binding
  • ATPase binding

Gene-Specific Assays for Results You Can Trust

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