AABR07041949.1 Gene Summary [Rat]
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including Sertoli cell development; diencephalon development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within animal organ morphogenesis; forebrain development; and spermatid differentiation. Predicted to be located in nucleoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in X-linked panhypopituitarism. Orthologous to human SOX3 (SRY-box transcription factor 3). [provided by Alliance of Genome Resources, Jul 2025]
Details
| Type | Pseudogene |
| Official Symbol | AABR07041949.1 |
| Official Name | SRY-box transcription factor 3 [Source:NCBI gene;Acc:679158] |
| Ensembl ID | ENSRNOG00000058173 |
| Bio databases IDs | |
| Aliases | SRY-box transcription factor 3 |
| Synonyms | GHDX, LOC679158, MRGH, PHP, PHPX, SOXB, SRY-box transcription factor 3, SRY (sex determining region Y)-box 3 |
| Species | Rat, Rattus norvegicus |
| Orthologies |
Protein Domains
A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Aabr07041949.1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
- RNA polymerase II transcription factor activity, sequence-specific DNA binding
- transcription regulator
- double-stranded DNA binding
- nucleic acid binding
- high mobility group (HMG)-box domain superfamily
- HMG (high mobility group) box
- SOX transcription factor
- HMG-box domain
- high mobility group
- protein binding
- sequence-specific DNA binding
- DNA binding
Pathways
Biological processes and signaling networks where the Aabr07041949.1 gene in rat plays a role, providing insight into its function and relevance in health or disease.
Top Findings
The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
- nonsyndromic bilateral cleft lip and palate
- nonsyndromic unilateral cleft lip and palate
- panhypopituitarism - X-linked
- nonsyndromic cleft lip and palate
- oligozoospermia
- X-linked mental retardation with isolated growth hormone deficiency
- glioma
- glioma formation
role in cell
- expression in
- apoptosis
- proliferation
- migration
- number
- abnormal morphology
- differentiation
- invasion by
- transformation
- depletion
Subcellular Expression
Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
- Nucleus
- nucleoplasm
- chromatin
Gene Ontology Annotations
Describes the biological processes, cellular components, and molecular functions associated with the rat Aabr07041949.1 gene, providing context for its role in the cell.
Biological Process
Functions and activities the gene product is involved in
- negative regulation of transcription from RNA polymerase II promoter
- central nervous system development
- neuron differentiation
- negative regulation of neuron differentiation
- hypothalamus development
- sex determination
- brain development
- positive regulation of transcription from RNA polymerase II promoter
- face development
- sensory organ development
- pituitary gland development
Cellular Component
Where in the cell the gene product is active
- nucleus
- chromatin
- nucleoplasm
Molecular Function
What the gene product does at the molecular level
- DNA binding
- protein binding
- RNA polymerase II core promoter proximal region sequence-specific DNA binding
- RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
- sequence-specific DNA binding RNA polymerase II transcription factor activity