This gene encodes a type III intermediate filament protein. Intermediate filaments, along with microtubules and actin microfilaments, make up the cytoskeleton. The encoded protein is responsible for maintaining cell shape and integrity of the cytoplasm, and stabilizing cytoskeletal interactions. This protein is involved in neuritogenesis and cholesterol transport and functions as an organizer of a number of other critical proteins involved in cell attachment, migration, and signaling. Bacterial and viral pathogens have been shown to attach to this protein on the host cell surface. Mutations in this gene are associated with congenital cataracts in human patients. [provided by RefSeq, Aug 2017]
A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
Intermediate filament head (DNA binding) region
intermediate filament binding
Domain of unknown function (DUF4515)
camkii phosphorylation site
protein kinase binding
protein phosphatase binding
alpha helix
coiled-coil domain
protein domain specific binding
protein binding
cleavage site
identical protein binding
head domain
RNA binding
structural constituent of eye lens
kinase binding
structural constituent of cytoskeleton
double-stranded RNA binding
head-rod domain
tail domain
Intermediate filament protein
structural molecule
rod domain
Pathways
Biological processes and signaling networks where the VIM gene plays a role, providing insight into its function and relevance in health or disease.
The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
ADRA1A
EGFR
CDK2
NIPAL3
UBE2U
TCF3
KLF11
DUX4
CCSER2
SMC5
disease
metastasis
fibrosis
prostate cancer
neoplasia
breast cancer
non-small cell lung cancer
papillary thyroid cancer
cancer
thyroid cancer
epithelial cancer
regulated by
isoproterenol
LEP
CCN5
indomethacin
PTEN
TFEB
FOXF2
LPCAT1
CASP3
DNMT1
regulates
ERK1/2
MAPK1
PTGS2
RELA
AKT
TGFB1
NOTCH1
SNAI1
JAG1
CDH1
role in cell
expression in
apoptosis
lysis
acidification
activation in
growth
accumulation in
signaling in
migration
number
Subcellular Expression
Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
Cytoplasm
interchromatin granule cluster fractions
microsomal fraction
detergent-insoluble fractions
pH resistant lipid raft fraction
detergent resistant lipid raft fraction
aggresome
aggregate
microtentacles
intermediate filament cytoskeleton
extracellular vesicles
perinuclear filament
cytoskeleton
cell surface
cell periphery
perinuclear region
retraction fibers
filamentous network
podosomes
Nucleus
Plasma Membrane
vesicles
lysosome
microtubules
intermediate filaments
myofilaments
lipid droplets
microtubule organizing centers
cytosol
chromosome
nuclear pores
inner nuclear membrane
nucleoli
nuclear envelope
nuclear matrix
neurites
peroxisomes
cellular protrusions
membrane processes
filopodia
cell membrane leading edge
perikaryon
axons
phagosomes
plasma
detergent-soluble fraction
cytoskeletal fraction
cytoplasmic fraction
Gene Ontology Annotations
Describes the biological processes, cellular components, and molecular functions associated with the VIM gene, providing context for its role in the cell.
BIOLOGICAL PROCESS
Functions and activities the gene product is involved in
astrocyte development
neuron projection development
Bergmann glial cell differentiation
regulation of mRNA stability
intermediate filament organization
positive regulation of collagen biosynthetic process
cellular response to lipopolysaccharide
negative regulation of neuron projection development
positive regulation of gene expression
cellular response to interferon-gamma
cellular response to muramyl dipeptide
lens fiber cell development
CELLULAR COMPONENT
Where in the cell the gene product is active
cell leading edge
phagocytic vesicle
intermediate filament
plasma membrane
peroxisome
extracellular vesicular exosome
cytoskeleton
microtubule organizing center
focal adhesion
intermediate filament cytoskeleton
cytoplasm
nuclear matrix
cytosol
axon
MOLECULAR FUNCTION
What the gene product does at the molecular level
scaffold protein binding
identical protein binding
protein domain specific binding
protein binding
double-stranded RNA binding
structural constituent of cytoskeleton
structural constituent of eye lens
binding, bridging
Gene-Specific Assays for Results You Can Trust
Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.