TCF3

TCF3 Gene Summary

This gene encodes a member of the E protein (class I) family of helix-loop-helix transcription factors. E proteins activate transcription by binding to regulatory E-box sequences on target genes as heterodimers or homodimers, and are inhibited by heterodimerization with inhibitor of DNA-binding (class IV) helix-loop-helix proteins. E proteins play a critical role in lymphopoiesis, and the encoded protein is required for B and T lymphocyte development. Deletion of this gene or diminished activity of the encoded protein may play a role in lymphoid malignancies. This gene is also involved in several chromosomal translocations that are associated with lymphoid malignancies including pre-B-cell acute lymphoblastic leukemia (t(1;19), with PBX1), childhood leukemia (t(19;19), with TFPT) and acute leukemia (t(12;19), with ZNF384). Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene, and a pseudogene of this gene is located on the short arm of chromosome 9. [provided by RefSeq, Sep 2011]

Details

Type
Nonsense Mediated Decay
Official Symbol
TCF3
Official Name
transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:11633]
Ensembl ID
ENSG00000071564
Bio databases IDs NCBI: 6929 Ensembl: ENSG00000071564
Aliases transcription factor 3, transcription factor E2-alpha, immunoglobulin transcription factor 1, kappa-E2-binding factor, E2A immunoglobulin enhancer-binding factor E12/E47, VDR interacting repressor
Synonyms
A1,AGM8,AGM8A,AGM8B,ALF2,bHLHb21,E12/E47,E2-5,E2A,E47,ITF1,KA1,LOC100364490,LOC688265,ME2,p75,Pan1,Pan2,TCF3 isoform 1,Tcfe2a,TRANSCRIPTION FACTOR 3,VDIR
Species
Human, Homo sapiens

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Lsc-homology domain
  • transcription regulator
  • G1 cyclin dependent kinase site
  • transcription activation domain
  • transcription factor binding
  • chromatin binding
  • identical protein binding
  • RNA polymerase II transcription factor activity, sequence-specific DNA binding
  • helix-loop-helix domain
  • Helix-loop-helix DNA-binding domain
  • basic domain
  • RNA polymerase II transcription regulatory region sequence-specific binding transcriptional activator activity
  • AD2 domain
  • activation domain
  • AD1 domain
  • protein kinase binding
  • DNA binding domain
  • nucleic acid binding
  • MLK binding domain
  • basic Helix Loop Helix (bHLH) domain superfamily
  • alpha helix
  • Ubc binding domain
  • protein binding
  • activation domain AD1
  • sequence-specific DNA binding
  • nonacidic domain
  • acidic domain
  • DNA binding
  • PDZ-domain binding
  • loop-helix motif
  • RNA polymerase II transcription regulatory region sequence-specific binding transcriptional repressor activity
  • transcription repression domain
  • double-stranded DNA binding
  • protein homodimerization
  • helix loop helix domain
  • transcription factor activity
  • protein heterodimerization

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
  • 26S proteasome
  • TF
  • ID3
  • TAL1
  • NEUROG1
  • NEUROG2
  • MYOD1
  • ID1
  • VIM
  • FBL
disease
  • precursor B-cell acute lymphoblastic leukemia
  • neoplasia
  • T-cell non-Hodgkin disease
  • non-Hodgkin disease
  • T cell cancer
  • lymphomagenesis
  • hematologic cancer
  • lymphoid cancer
  • cancer
  • hematological neoplasia
regulated by
  • VDR
  • lipopolysaccharide
  • KITLG
  • MYC
  • hydrogen peroxide
  • NOTCH1
  • MYOD1
  • HES1
  • TCF3
  • TWIST1
regulates
  • FGFR3
  • PRDM1
  • BCL2L11
  • CDKN2A
  • JUN
  • KLF2
  • BIRC5
  • ESR1
  • CDKN1A
  • ID2
role in cell
  • expression in
  • degradation in
  • activation in
  • apoptosis
  • replication in
  • growth
  • transmembrane potential
  • formation
  • cell death
  • cell viability

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • Cytoplasm
  • cytosol
  • nucleosomes
  • nucleoplasm
  • chromatin
  • plasma

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the TCF3 gene, providing context for its role in the cell.

BIOLOGICAL PROCESS

Functions and activities the gene product is involved in
  • negative regulation of transcription from RNA polymerase II promoter
  • B cell lineage commitment
  • B cell differentiation
  • positive regulation of transcription, DNA-dependent
  • immunoglobulin V(D)J recombination
  • nervous system development
  • positive regulation of neuron differentiation
  • regulation of transcription, DNA-dependent
  • positive regulation of sequence-specific DNA binding transcription factor activity
  • positive regulation of transcription from RNA polymerase II promoter
  • regulation of transcription from RNA polymerase II promoter

CELLULAR COMPONENT

Where in the cell the gene product is active
  • transcription factor complex
  • nucleus
  • euchromatin
  • cytoplasm
  • chromatin
  • nucleoplasm

MOLECULAR FUNCTION

What the gene product does at the molecular level
  • protein homodimerization activity
  • RNA polymerase II core promoter proximal region sequence-specific DNA binding
  • core promoter proximal region sequence-specific DNA binding
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
  • RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
  • sequence-specific DNA binding RNA polymerase II transcription factor activity
  • bHLH transcription factor binding
  • DNA binding
  • sequence-specific DNA binding transcription factor activity
  • protein binding
  • protein heterodimerization activity
  • vitamin D response element binding
  • mitogen-activated protein kinase kinase kinase binding
  • E-box binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.