CDH1

CDH1 Gene Summary

This gene encodes a classical cadherin of the cadherin superfamily. Alternative splicing results in multiple transcript variants, at least one of which encodes a preproprotein that is proteolytically processed to generate the mature glycoprotein. This calcium-dependent cell-cell adhesion protein is comprised of five extracellular cadherin repeats, a transmembrane region and a highly conserved cytoplasmic tail. Mutations in this gene are correlated with gastric, breast, colorectal, thyroid and ovarian cancer. Loss of function of this gene is thought to contribute to cancer progression by increasing proliferation, invasion, and/or metastasis. The ectodomain of this protein mediates bacterial adhesion to mammalian cells and the cytoplasmic domain is required for internalization. This gene is present in a gene cluster with other members of the cadherin family on chromosome 16. [provided by RefSeq, Nov 2015]

Details

Type
Protein Coding
Official Symbol
CDH1
Official Name
cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]
Ensembl ID
ENSG00000039068
Bio databases IDs NCBI: 999 Ensembl: ENSG00000039068
Aliases cadherin 1, E-Cadherin
Synonyms
ARC-1,BCDS1,cadherin 1,Cadherin E,CD324,CDHE,CSEIL,ECAD,E-cadherin,L-CAM,Um,UVO,uvomorulin
Species
Human, Homo sapiens

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • alpha-catenin binding
  • Cadherin-like repeat
  • cell adhesion molecule binding
  • calcium binding loop
  • identical protein binding
  • membrane distal domain
  • p120-catenin binding domain
  • cytoskeletal protein binding
  • serine-rich region
  • alpha catenin-binding domain
  • ankyrin binding
  • cytoplasmic domain
  • Cadherin repeat-like domain
  • intracellular domain
  • membrane-proximal domain
  • G12 binding domain
  • beta-catenin binding domain
  • extracellular domain
  • RVL motif
  • protein kinase binding
  • beta-catenin binding
  • protein phosphatase binding
  • ectodomain
  • calcium ion binding
  • central domain
  • protein domain specific binding
  • protein binding
  • acidic domain
  • phosphorylation site
  • Cadherin, Y-type LIR-motif
  • CH2 domain (from immunoglobulin)
  • gamma catenin binding domain
  • gamma-catenin binding
  • Cadherin prodomain like
  • transmembrane domain
  • cell adhesion recognition domain
  • catenin binding domain
  • cytosolic tail domain
  • charged domain
  • extracellular cadherin structural domain

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
  • ERBB2
  • MET
  • EPB41L1
  • PKP3
  • CTNNB1
  • CBLL1
  • MAP4
  • BAG3
  • PSEN1
  • DNAJB1
disease
  • colorectal cancer
  • non-small cell lung cancer
  • neoplasia
  • hereditary cancer-predisposing syndrome
  • diffuse gastric and lobular breast cancer syndrome
  • congenital cystic adenomatoid malformation
  • cutaneous melanoma
  • anaplastic thyroid carcinoma
  • anaplastic thyroid cancer
  • epithelial thyroid cancer
regulated by
  • LEP
  • GLI1
  • RNF2
  • HRAS
  • EFEMP1
  • NOTCH1
  • NR2F1
  • MMP9
  • resveratrol
  • CDH1
regulates
  • VEGFA
  • EGFR
  • IL10
  • INSR
  • STAT5A/B
  • PI3K (complex)
  • IFNG
  • MAPK
  • TNF
  • IGF1R
role in cell
  • growth
  • expression in
  • apoptosis
  • accumulation in
  • cell death
  • binding in
  • ubiquitination in
  • differentiation
  • activation in
  • replication in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • detergent-insoluble membrane fraction
  • plasma membrane fraction
  • soluble fraction
  • detergent-insoluble fractions
  • detergent-soluble membrane fractions
  • membrane fraction
  • insoluble fractions
  • glutaminergic synapse
  • cell junction
  • cortical actin cytoskeleton
  • apical extension
  • Cytoplasm
  • cell surface
  • cell borders
  • Extracellular Space
  • cell periphery
  • intracellular space
  • apical compartment
  • basal compartment
  • perinuclear region
  • postsynaptic region
  • membrane surface
  • cellular membrane
  • focal adhesions
  • actin cytoskeleton
  • Nucleus
  • endosomes
  • vesicles
  • intercellular junctions
  • desmosomes
  • cell-cell contacts
  • cytosol
  • lateral cell surfaces
  • apical cell surfaces
  • basolateral cell surfaces
  • cytoplasmic face of plasma membrane
  • endoplasmic reticulum buds
  • caveolar membranes
  • apical membrane
  • basolateral membrane
  • lateral plasma membrane
  • trans Golgi network
  • nodes of Ranvier
  • paranodal loops
  • paranodes
  • myelin sheath
  • Schmidt-Lanterman incisures
  • periplasmic membranes
  • early endosomes
  • perinuclear vesicles
  • anchoring junction
  • tight junctions
  • junctional complexes
  • zonula adherens
  • lateral cell-cell contacts
  • microvilli
  • cell membrane leading edge
  • axons
  • axon terminals
  • cell-cell adherens junctions
  • plasma
  • lamellipodia
  • macropinosomes
  • detergent-soluble fraction
  • cytoskeletal fraction

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the CDH1 gene, providing context for its role in the cell.

BIOLOGICAL PROCESS

Functions and activities the gene product is involved in
  • positive regulation of protein import into nucleus
  • calcium-dependent cell-cell adhesion
  • adherens junction organization
  • cell-cell junction assembly
  • neuron projection development
  • multicellular organismal development
  • cell morphogenesis
  • negative regulation of cell-cell adhesion
  • homophilic cell adhesion
  • response to xenobiotic stimulus
  • response to toxin
  • pituitary gland development
  • cellular response to lithium ion
  • cellular response to indole-3-methanol
  • synapse assembly
  • positive regulation of transcription, DNA-dependent
  • negative regulation of axon extension
  • cell-cell adhesion mediated by cadherin
  • regulation of gene expression
  • cell migration
  • negative regulation of cell migration
  • protein localization in plasma membrane

CELLULAR COMPONENT

Where in the cell the gene product is active
  • lateral plasma membrane
  • extracellular region
  • plasma membrane
  • internal side of plasma membrane
  • adherens junction
  • trans-Golgi network
  • extracellular vesicular exosome
  • endosome
  • perinuclear region of cytoplasm
  • membrane
  • apical junction complex
  • actin cytoskeleton
  • cell junction
  • catenin complex
  • cortical actin cytoskeleton
  • flotillin complex
  • lamellipodium

MOLECULAR FUNCTION

What the gene product does at the molecular level
  • gamma-catenin binding
  • identical protein binding
  • protein binding
  • ankyrin binding
  • cadherin binding
  • calcium ion binding
  • cell adhesion molecule binding
  • GTPase activating protein binding
  • beta-catenin binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.