SMARCE1 Gene Summary [Human]

The protein encoded by this gene is part of the large ATP-dependent chromatin remodeling complex SWI/SNF, which is required for transcriptional activation of genes normally repressed by chromatin. The encoded protein, either alone or when in the SWI/SNF complex, can bind to 4-way junction DNA, which is thought to mimic the topology of DNA as it enters or exits the nucleosome. The protein contains a DNA-binding HMG domain, but disruption of this domain does not abolish the DNA-binding or nucleosome-displacement activities of the SWI/SNF complex. Unlike most of the SWI/SNF complex proteins, this protein has no yeast counterpart. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
SMARCE1
Official Name
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [Source:HGNC Symbol;Acc:HGNC:11109]
Ensembl ID
ENSG00000073584
Bio databases IDs NCBI: 6605 Ensembl: ENSG00000073584
Aliases SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
Synonyms 2810417B20Rik, 5830412H02RIK, 9030408N19Rik, Baf27, BAF57, CSS5, RGD1304726, SWI/SNF related BAF chromatin remodeling complex subunit E1
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human SMARCE1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • NHRLI domain
  • transcription regulator
  • ligand-dependent nuclear receptor interactor
  • transcription co-activator
  • high mobility group (HMG)-box domain superfamily
  • nuclear localization sequence
  • chromatin binding
  • coiled-coil domain
  • protein binding
  • acidic domain
  • proline rich domain
  • RNA binding
  • N-acetyltransferase
  • HMG (high mobility group) box
  • HMG-box domain
  • high mobility group

Pathways

Biological processes and signaling networks where the SMARCE1 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • susceptibility to familial meningioma
  • hereditary disorder
  • Coffin-Siris syndrome type 5
  • hereditary cancer-predisposing syndrome
  • familial meningioma
  • meningeal neoplasia
regulated by
  • lipopolysaccharide
  • beta-estradiol
  • MYC
  • MYCN
  • tetradecanoylphorbol acetate
  • SETBP1
  • laduviglusib
  • methylselenic acid
  • fibroblasts
  • TRIP12
regulates
role in cell
  • proliferation
  • differentiation
  • morphology
  • growth
  • apoptosis
  • expression in
  • colony formation
  • activation in
  • contact growth inhibition
  • cell cycle progression

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • interchromatin granule cluster fractions
  • nuclear fraction
  • chromosome
  • nucleoplasm
  • detergent-soluble fraction

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human SMARCE1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • regulation of mitotic metaphase/anaphase transition
  • positive regulation of cell differentiation
  • neurogenesis
  • positive regulation of myoblast differentiation
  • regulation of nucleotide-excision repair
  • nucleosome disassembly
  • regulation of transcription from RNA polymerase II promoter
  • chromatin remodeling
  • negative regulation of transcription, DNA-dependent
  • positive regulation of transcription, DNA-dependent
  • positive regulation of T cell differentiation
  • regulation of G1/S transition of mitotic cell cycle
  • positive regulation of double-strand break repair
  • regulation of G0 to G1 transition

Cellular Component

Where in the cell the gene product is active
  • SWI/SNF complex
  • nuclear chromosome
  • brahma complex
  • kinetochore
  • chromatin
  • nucleoplasm
  • nucleus
  • npBAF complex
  • nuclear matrix
  • macromolecular complex
  • nBAF complex
  • RSC complex

Molecular Function

What the gene product does at the molecular level
  • ligand-dependent nuclear receptor binding
  • RNA binding
  • protein binding
  • transcription coactivator activity
  • nucleosomal DNA binding
  • chromatin binding
  • N-acetyltransferase activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.