COL16A1 Gene Summary [Human]

This gene encodes the alpha chain of type XVI collagen, a member of the FACIT collagen family (fibril-associated collagens with interrupted helices). Members of this collagen family are found in association with fibril-forming collagens such as type I and II, and serve to maintain the integrity of the extracellular matrix. High levels of type XVI collagen have been found in fibroblasts and keratinocytes, and in smooth muscle and amnion. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
COL16A1
Official Name
collagen type XVI alpha 1 chain [Source:HGNC Symbol;Acc:HGNC:2193]
Ensembl ID
ENSG00000084636
Bio databases IDs NCBI: 1307 Ensembl: ENSG00000084636
Aliases collagen type XVI alpha 1 chain
Synonyms 2700007F12Rik, 447AA, A530052M23Rik, CA1F, collagen, type XVI, alpha 1, collagen type XVI alpha 1 chain, collagen, type XVI, α 1, collagen type XVI α 1 chain, FP1572
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human COL16A1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • LamG
  • integrin binding
  • Collagen triple helix repeat (20 copies)
  • protein binding

Pathways

Biological processes and signaling networks where the COL16A1 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • androgenic alopecia
  • glaucoma
  • open-angle glaucoma
  • Peyronie disease
  • Dupuytren contracture
  • preeclampsia
  • burn
  • keratocystic odontogenic tumor
  • keratocystic odontogenic tumors
  • thoracic aortic aneurysm
regulated by
regulates
  • Integrin
role in cell
  • assembly
  • adhesion

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Extracellular Space
  • endoplasmic reticulum lumen

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human COL16A1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • cellular response to amino acid stimulus
  • cell adhesion mediated by integrin
  • integrin-mediated signaling pathway
  • positive regulation of focal adhesion assembly
  • extracellular matrix organization
  • female pregnancy
  • cell adhesion
  • integrin activation

Cellular Component

Where in the cell the gene product is active
  • endoplasmic reticulum lumen
  • extracellular space
  • collagen type IX
  • extracellular region
  • collagen type XVI

Molecular Function

What the gene product does at the molecular level
  • protein binding
  • extracellular matrix structural constituent conferring tensile strength
  • integrin binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.