SYNE1 Gene Summary [Human]

This gene encodes a spectrin repeat containing protein expressed in skeletal and smooth muscle, and peripheral blood lymphocytes, that localizes to the nuclear membrane. Mutations in this gene have been associated with autosomal recessive spinocerebellar ataxia 8, also referred to as autosomal recessive cerebellar ataxia type 1 or recessive ataxia of Beauce. Alternatively spliced transcript variants encoding different isoforms have been described. [provided by RefSeq, Jul 2008]

Details

Type
Retained Intron
Official Symbol
SYNE1
Official Name
spectrin repeat containing nuclear envelope protein 1 [Source:HGNC Symbol;Acc:HGNC:17089]
Ensembl ID
ENSG00000131018
Bio databases IDs NCBI: 23345 Ensembl: ENSG00000131018
Aliases spectrin repeat containing nuclear envelope protein 1, myocyte nuclear envelope protein 1, nuclear envelope spectrin repeat-1
Synonyms 8B, A330049M09Rik, AMC3, AMCM, ARCA1, C130039F11Rik, C6orf98, CPG2, dJ45H2.2, EDMD4, KASH1, LOC102546492, LOC103690962, mKIAA1756, MYNE1, Nesp1, NESPRIN-1, SCAR8, spectrin repeat containing, nuclear envelope 1, spectrin repeat containing nuclear envelope protein 1, Synaptic Nuclei Expressed Gene1 β, SYNE-1A
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human SYNE1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • SPEC
  • chromosome segregation protein SMC, primarily archaeal type
  • exonuclease SbcC
  • Calponin homology domain
  • protein binding activity, bridging
  • lamin binding
  • enzyme binding
  • protein binding
  • receptor binding
  • identical protein binding
  • actin filament binding
  • chromosome segregation protein SMC, common bacterial type
  • RecF/RecN/SMC N terminal domain
  • Spectrin repeats
  • Nuclear envelope localization domain
  • actin binding
  • KASH domain
  • Spectrin repeat
  • protein homodimerization
  • calponin homology (CH) domain superfamily
  • structural molecule

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
disease
  • neoplasia
  • bipolar disorder
  • major depression
  • myogenic type arthrogryposis multiplex congenita
  • uterine leiomyoma
  • leiomyomatosis
  • spinocerebellar ataxia recessive 8
  • bipolar I disorder
  • COVID-19
  • schizophrenia
regulated by
regulates
  • glutamate receptor (family)
role in cell
  • migration
  • proliferation
  • apoptosis
  • cell death
  • organization
  • assembly
  • abnormal morphology
  • differentiation
  • morphogenesis
  • rotation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • GW body
  • glutaminergic synapse
  • cytoplasmic mRNA processing body
  • cytoskeleton
  • Cytoplasm
  • perinuclear region
  • cellular membrane
  • focal adhesions
  • actin cytoskeleton
  • Golgi Apparatus
  • Endoplasmic Reticulum
  • microtubules
  • midbody
  • sarcomere
  • postsynaptic membrane
  • nucleoplasm
  • nucleoli
  • nuclear envelope
  • dendritic spines
  • dendritic spine head
  • actin stress fibers

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human SYNE1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • negative regulation of mesenchymal cell apoptotic process
  • spermatogenesis
  • Golgi organization
  • muscle cell differentiation
  • positive regulation of mesenchymal cell proliferation
  • nuclear matrix anchoring at nuclear membrane
  • positive regulation of receptor-mediated endocytosis
  • cardiac muscle cell differentiation
  • nucleus organization
  • response to light stimulus
  • regulation of dendrite morphogenesis

Cellular Component

Where in the cell the gene product is active
  • cytoplasmic mRNA processing body
  • Golgi apparatus
  • nuclear outer membrane
  • nucleolus
  • dendritic spine head
  • nucleoplasm
  • nuclear envelope
  • nucleus
  • nuclear membrane
  • perinuclear region of cytoplasm
  • cytoskeleton
  • cytoplasm
  • postsynaptic membrane
  • membrane
  • midbody
  • SUN-KASH complex
  • sarcomere

Molecular Function

What the gene product does at the molecular level
  • actin filament binding
  • protein binding
  • RNA binding
  • protein homodimerization activity
  • actin binding
  • lamin binding
  • receptor binding
  • enzyme binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.