SEMA6D Gene Summary [Human]

Semaphorins are a large family, including both secreted and membrane associated proteins, many of which have been implicated as inhibitors or chemorepellents in axon pathfinding, fasciculation and branching, and target selection. All semaphorins possess a semaphorin (Sema) domain and a PSI domain (found in plexins, semaphorins and integrins) in the N-terminal extracellular portion. Additional sequence motifs C-terminal to the semaphorin domain allow classification into distinct subfamilies. Results demonstrate that transmembrane semaphorins, like the secreted ones, can act as repulsive axon guidance cues. This gene encodes a class 6 vertebrate transmembrane semaphorin that demonstrates alternative splicing. Several transcript variants have been identified and expression of the distinct encoded isoforms is thought to be regulated in a tissue- and development-dependent manner. [provided by RefSeq, Nov 2010]

Details

Type
Protein Coding
Official Symbol
SEMA6D
Official Name
semaphorin 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Ensembl ID
ENSG00000137872
Bio databases IDs NCBI: 80031 Ensembl: ENSG00000137872
Aliases semaphorin 6D
Synonyms 1110067B02Rik, D330011G23, mKIAA1479, sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, semaphorin 6D
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human SEMA6D often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • semaphorin domain
  • extracellular domain
  • Plexin repeat
  • semaphorin receptor binding
  • receptor agonist activity
  • protein binding
  • Sema domain
  • The Sema domain, a protein interacting module, of semaphorins and plexins

Pathways

Biological processes and signaling networks where the SEMA6D gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • insomnia
  • depressive disorder
  • restless legs syndrome
  • major depression
  • Alzheimer disease
  • attention deficit hyperactivity disorder
  • substance-related disorder
  • metabolic syndrome X
  • opioid-related disorder
regulated by
regulates
role in cell
  • migration
  • proliferation
  • collapse
  • colony formation by
  • migration by
  • extension

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • Cytoplasm
  • cell surface
  • cellular membrane
  • Golgi Apparatus

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human SEMA6D gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • ventricular system development
  • negative chemotaxis
  • smooth muscle cell migration
  • neural crest cell migration
  • axon guidance
  • negative regulation of smooth muscle cell migration
  • positive regulation of smooth muscle cell migration
  • positive regulation of cell migration
  • semaphorin-plexin signaling pathway

Cellular Component

Where in the cell the gene product is active
  • Golgi apparatus
  • plasma membrane

Molecular Function

What the gene product does at the molecular level
  • chemorepellent activity
  • semaphorin receptor binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.